3300006710: Metatranscriptome of deep ocean microbial communities from Blanes Bay, Balearic Sea - MPBL120807 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300006710
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0092411 | Ga0031677
• Sample Name: Metatranscriptome of deep ocean microbial communities from Blanes Bay, Balearic Sea - MPBL120807 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 90291086
• Sequencing Scaffolds: 10
• Novel Protein Genes: 12
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
Not Available	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → alpha proteobacterium HIMB59	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Blanes Bay
• Coordinates
  • Lat. (^o): 41.67
  • Long. (^o): 2.8
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000075	Metagenome / Metatranscriptome	2622	Y
F001583	Metagenome / Metatranscriptome	668	Y
F024568	Metatranscriptome	205	Y
F035314	Metagenome / Metatranscriptome	172	N
F037503	Metagenome / Metatranscriptome	168	Y
F056627	Metagenome / Metatranscriptome	137	N
F058929	Metagenome / Metatranscriptome	134	N
F070259	Metagenome / Metatranscriptome	123	Y
F103188	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0031677_1012987	All Organisms → cellular organisms → Bacteria	1915
Ga0031677_1014275	All Organisms → cellular organisms → Bacteria	1796
Ga0031677_1015814	Not Available	1707
Ga0031677_1156768	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	774
Ga0031677_1158090	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	500
Ga0031677_1188717	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	725
Ga0031677_1197773	Not Available	561
Ga0031677_1201070	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	605
Ga0031677_1217943	Not Available	774
Ga0031677_1220300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → alpha proteobacterium HIMB59	543

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0031677_1000611	Ga0031677_10006111	F000075	DLLVSLESTLSSAQASEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0031677_1001917	Ga0031677_10019171	F000075	FAIAVAANKYDSMNEDDLLVSLESTLSSAQASEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0031677_1012987	Ga0031677_10129872	F037503	MHLGAASRLSFIEVELLIGLGGFTAYQPLTNSECYEIYSGVRAWVLRSMSERERTQTIS*
Ga0031677_1014275	Ga0031677_10142752	F037503	MHLGAASELSVIEVELLIRLGGFTAYQTLINSECYDICPGVRAWVLRSMSERERTQTIR*
Ga0031677_1015814	Ga0031677_10158144	F070259	MKSESLVIVNQYVTVNDVSNFAHTAHHARRVVSAG
Ga0031677_1156768	Ga0031677_11567681	F001583	EMFNDTRFGSEVFYMHVRGVDSLMLLSYIHILKKIFLKNYVTSESDG*LLGGYAFLFFHYIIFLGISLSATHLSDLTLTIGANIF*SLFNNFYKTYYIVFTNKHLNTDQLTRIMVLHYFTP*YYIYLIKLHVLFCHES*DSDSGENTYEDKTGTYVS*FYDAFLKEIQDA*Y*VTYVYLYFFLHHFNGSTINYFFFER*NIAELDEIRFYGVAPH*YFRPYMGLLVISPTHYEGLM*MGLFLGSLAFLPVIYNVYNAM
Ga0031677_1158090	Ga0031677_11580901	F024568	RLTATFLASVAGLSDETSLMQGLKPQQVTQKEDKSKAIANLLQSATSMLKNGATPDVVDFAQETLTEITGVVLPAITDAHNADQQLVDSTFALFESEVFTQLRQGQARVDALAAEERRLSAAHIACRAQEEIDCINKRRCDYDLWELWRRFVEEEEILRQLSLQIN
Ga0031677_1188717	Ga0031677_11887171	F035314	MIPPNIDNKRSSNVIDTKENFIANKKAMTLTTILKKEAENEEERAEYLRVMRFVKAIQKAPIKTKNIPDKETSLEPNGSAEINTPVKPRIMADILMILMFSFRKKWDITKSIKGELKRTG
Ga0031677_1197773	Ga0031677_11977732	F058929	VKKIEIVTIYSVFLLDSLSTTSNISVAEHKVGVTADT
Ga0031677_1201070	Ga0031677_12010701	F001583	SYYIIFTNKHLNVDQLTRFMILHYFTP*YYLYLIQMHVLFCHES*DSDSGETTYEDKTGTYAS*FYDGMLKEVQDG*Y*VMYIFIYFSLHHFNGASVNYFFFER*NIAEVDEIRYYGVAPH*YFRPLMGMLIVCPTHYEGVF*LLFYLGLLAMLPIVYNFYNSHTKHVPAIPMQNSLLQTTAFMLFMMSLYCTASILPCGR
Ga0031677_1217943	Ga0031677_12179432	F056627	MAKTQIVEQAIAQIEETSTKRQIEAAKLLTNAVSGDLRAKTMLQEGISSSDIPTVLEPAINVIFLAQYAAEQNVWDQIADEYQAPNFGVIRFGDFQVDPSALVAGEGEEFINGGLPRVGEYEEYPAVPFTTTQLDKDFEGKYGVRARMSWESLRRTGDFDMIPRMTEKFAQYAARQEDFELAKLFVTSAGAVGSGFSGKGL
Ga0031677_1220300	Ga0031677_12203002	F103188	HTMINKIRLNILKGAKPESFRFSSLNTQKITFAGFNKPRNQSKRIAA*