3300006708: Metatranscriptome of deep ocean microbial communities from Pacific Ocean - MP1480 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300006708
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0092426 | Ga0031692
• Sample Name: Metatranscriptome of deep ocean microbial communities from Pacific Ocean - MP1480 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 79525674
• Sequencing Scaffolds: 6
• Novel Protein Genes: 10
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella cf. planticola B43	1
Not Available	4
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: South of Fiji, South Pacific Ocean
• Coordinates
  • Lat. (^o): -28.41
  • Long. (^o): 179.14
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000023	Metagenome / Metatranscriptome	5736	Y
F000059	Metagenome / Metatranscriptome	3008	Y
F000075	Metagenome / Metatranscriptome	2622	Y
F007073	Metagenome / Metatranscriptome	358	Y
F014836	Metagenome / Metatranscriptome	259	Y
F056539	Metagenome / Metatranscriptome	137	Y
F063613	Metatranscriptome	129	N
F070259	Metagenome / Metatranscriptome	123	Y
F082867	Metagenome / Metatranscriptome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0031692_1008426	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella cf. planticola B43	1502
Ga0031692_1234642	Not Available	741
Ga0031692_1242014	Not Available	834
Ga0031692_1242268	Not Available	669
Ga0031692_1245198	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii	560
Ga0031692_1256015	Not Available	911

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0031692_1008426	Ga0031692_10084261	F070259	MKSESLVIVNQNVTVNDTSNFAHTAHHARKVVLVGNLVFLFITVISLFIILY
Ga0031692_1214875	Ga0031692_12148751	F000059	RTEELEAISKAIEILGSGAVSGAADKHLPALVQKPVSFLQLGSRSQSPTQAKVAQFLREKGEEIDSRVLSALAVRVAEDPFVKVKKMIKDLIVRLMEEANEEAEHKGWCDTELSTNEQTRKEKTAQVETLHAEIDELSASIAKLTQEITDLTAEIAAIDAAVAEATDIRNKEKAENTVTI
Ga0031692_1221794	Ga0031692_12217941	F000023	VEATMTAEISTMRLDIGDIQEALKNHDSWMEDVSNTLQQMQEKEENLTEDIINLKNEMNTKLDTKVDNVAWKEANDDLDAAIKTVRDMVSSLRLDVDARRRKVDEILATIRHDITAVETNLEESKAKITSDTDQAVNALNGRIDFTNKDLADILAEMANADSHLTY*
Ga0031692_1221940	Ga0031692_12219401	F056539	GLVSCQLALVNPEGRGFSFHDARHGPCGQSPSEPGNRIAWEQNSVHEIEVQILGAAGGGVIVDRYSCVRNGDDENPIEPILPIEGALKVKVPDFDDQIYRLYVRTPSFRCTGDVTMQLVYSAENGQEFFQCQDIVLTYSGASALSMSIFAVIALALMIL*
Ga0031692_1234642	Ga0031692_12346421	F082867	MPKNRSRRVHHINDINHNDTNITVQYRVVKPLTFTSNTLLLTVNPTLTDLSNTLATIYRQYRVTELSFTFQCSDVAGAYALAMQYVPQVGATPSTLPTTLSEFEGPAVGYCETGRGREYTYRVPSNVLNAMGLNYYSTRVNTAPAQDPDMATQGLMVFLTSTPATPIIAFMHVKYEFQTLEDPSFLAKLMHGEYKESQATDSVFVTGPSKAKAGELWN*
Ga0031692_1242014	Ga0031692_12420141	F082867	MPRKKGSRSRRVHHINDINHNDTNITVQYRVVKPLTFTTNTLLLKVNPTLTELSDTLATIYRQYRVTELSFTFQCSDVAGAFALAMQYVPQIGGNPSALPTQLSEFEGPAVGYCETGRGREYTYRVPSNVLNAMGLNYYSTRVNVSPAQDSDVLTQGLMVFLTSTPATPIIAYMHVKFEFQTLEDPSFLAKLMNNDEKDQNDTLIVPRMNKTQAGGSWNQVQ*
Ga0031692_1242268	Ga0031692_12422681	F014836	VVVFLLAALSSLALAQCPLERNTCYEEEIYNGCFCFAEWNDANDVGNWTVNENWLQLMEPSWVHFVSISGDNTVTVDEERRINELYVGPNRWDTTRLVIDEDLTIVYDDVPVISRIQAYRLPTGQVRLIIQGKGFGFVSEDIAVVAEDFYEVDNDSNIDDMEPFTYVCNNPTLTYRDAKIECNLTAANIMPSALKVQVRANGYTTDFVLLSEYVQ*
Ga0031692_1245198	Ga0031692_12451981	F063613	MYFILLTMNLITSLLKKRGGERGSGLLVGLALKGSGGLLALVVGGSTNLSLLLQSLDGILVLPSDLVGQTTEASEVAARSESQHTEGLRANHTVDLVVRRGDTLEDLEVSQSGGTTGGLVGDHSTDGSPENLRGSTEVERTTSGVDVASLSKEVLVLELVSEVRTRDVDVLATNNNDLLSGQELLG
Ga0031692_1254059	Ga0031692_12540591	F000075	ANTYDFMGEDDLLAQLETTLNSAQRSEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0031692_1256015	Ga0031692_12560151	F007073	MKLFVVLVAFCAAALALDAVGEGFAGSPDQVINPANWHGTWTANNRYGGQMYACPKGDRLYGVYSNAGFFIGRIEGRVVEGTWYEGGRGDRNDWQGAFRIELDADNQGFDGFYHRVTQDGTELRWKEERLGAPWPSNPTQDQCLVPGDEPLLGNFYNEAGQGRESAVYSLCKDEFDQIYGSFGSPDGFLEGWSVDDSTGFHGYRYDSNGRSGAYILRAVSDTVVKGFYWRGRLARQNIETSVPETLHRTSYTSRLDDCERVGPGFLRRFVRSNCSCWHFEC*