3300006707: Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP0362 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300006707
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0092398 | Ga0031664
• Sample Name: Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP0362 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 78023140
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii	1
Not Available	1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED161	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: East of Porto Seguro, South Atlantic Ocean
• Coordinates
  • Lat. (^o): -15.83
  • Long. (^o): -33.4
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021791	Metagenome / Metatranscriptome	217	Y
F025846	Metagenome / Metatranscriptome	200	Y
F056539	Metagenome / Metatranscriptome	137	Y
F063613	Metatranscriptome	129	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0031664_1008064	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii	635
Ga0031664_1198271	Not Available	654
Ga0031664_1241816	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED161	670

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0031664_1008064	Ga0031664_10080641	F063613	CFMYFILLTMNLITSLLKKRGGERGSGLLVGLALKGSGGLLALVVGGSTNLSLLLQSLDGILVLPSDLVGQTTEASEVAARSESQHTEGLRANHTVDLVVRRGDTLEDLEVSQSGGTTGGLVGDHSTDGSPENLRGSTEVERTTSGVDVASLSKEVLVLELVSEVRTRDVDVLATNNNDLLSGQELLGNSGGKTAQKVTLSVNHDSLLKHA
Ga0031664_1176375	Ga0031664_11763751	F056539	SCVMKVQAIVLLALLGLVSCQLALVNPAGRGFSFHDARHAPCGQSPTEVGDRIAWEQGRVYEIEVQVLGAAGGGVIVDRYACVRNGDDENPIEPILPIEGALKVQIPDYDDQIYRLYTRTPSFRCTGDVTMQLVYSAENGQEFFQCQDIILTYSGAASLTMSVFAIIAVVLMVL*
Ga0031664_1198271	Ga0031664_11982713	F021791	ADYRIKPHVPPFKQIPANFVKFKPCDYTPQAEYLTC*
Ga0031664_1241816	Ga0031664_12418162	F025846	LVSMAHGHVTAMVTVLMAQTKLTVLLHHVKTKVYGIVAMANVFQHHMYVMAQVNSVTQAGLQTVPMAQMKA*