Sample 3300006705

Basic Information
IMG/M Taxon OID	3300006705 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053074 \| Gp0092418 \| Ga0031684
Sample Name	Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP547 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300006705 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0053074 | Gp0092418 | Ga0031684

Sample Name

Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP547 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	75206620
Sequencing Scaffolds	16
Novel Protein Genes	21
Associated Families	20

Dataset Contents

Total Genome Size

75206620

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	11
All Organisms → cellular organisms → Eukaryota → Sar	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Syndiniales → Amoebophryaceae → Amoebophrya	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Eukaryota → Sar

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Syndiniales → Amoebophryaceae → Amoebophrya

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii

Ecosystem Assignment (GOLD)
Name	Deep Ocean Microbial Communities From The Global Malaspina Expedition
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Ecosystem Assignment (GOLD)

Name

Deep Ocean Microbial Communities From The Global Malaspina Expedition

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → marine water body → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	South Atlantic Ocean
Coordinates	Lat. (^o)	-26.95	Long. (^o)	-21.4	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

South Atlantic Ocean

Coordinates

Lat. (^o)

-26.95

Long. (^o)

-21.4

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000049	Metagenome / Metatranscriptome	3277	Y
F000052	Metagenome / Metatranscriptome	3223	Y
F000075	Metagenome / Metatranscriptome	2622	Y
F001716	Metatranscriptome	647	Y
F006501	Metagenome / Metatranscriptome	371	N
F010461	Metatranscriptome	303	Y
F010686	Metagenome / Metatranscriptome	300	Y
F010768	Metagenome / Metatranscriptome	299	Y
F014836	Metagenome / Metatranscriptome	259	Y
F019484	Metagenome / Metatranscriptome	229	Y
F027881	Metagenome / Metatranscriptome	193	Y
F030135	Metagenome / Metatranscriptome	186	Y
F046996	Metagenome / Metatranscriptome	150	Y
F051870	Metatranscriptome	143	N
F061786	Metagenome / Metatranscriptome	131	Y
F063613	Metatranscriptome	129	N
F070259	Metagenome / Metatranscriptome	123	Y
F090278	Metatranscriptome	108	N
F097173	Metatranscriptome	104	Y
F101008	Metatranscriptome	102	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0031684_1000698	Not Available	518	Open in IMG/M
Ga0031684_1013363	Not Available	776	Open in IMG/M
Ga0031684_1016401	All Organisms → cellular organisms → Eukaryota → Sar	602	Open in IMG/M
Ga0031684_1024000	All Organisms → cellular organisms → Bacteria	2068	Open in IMG/M
Ga0031684_1155457	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta	642	Open in IMG/M
Ga0031684_1162320	Not Available	572	Open in IMG/M
Ga0031684_1182008	Not Available	653	Open in IMG/M
Ga0031684_1192364	Not Available	516	Open in IMG/M
Ga0031684_1193763	Not Available	600	Open in IMG/M
Ga0031684_1197521	Not Available	541	Open in IMG/M
Ga0031684_1206314	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Syndiniales → Amoebophryaceae → Amoebophrya	752	Open in IMG/M
Ga0031684_1208891	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii	625	Open in IMG/M
Ga0031684_1210502	Not Available	1182	Open in IMG/M
Ga0031684_1212634	Not Available	733	Open in IMG/M
Ga0031684_1214563	Not Available	673	Open in IMG/M
Ga0031684_1232933	Not Available	946	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0031684_1000698	Ga0031684_10006982	F070259	MKLESLVIANQHVTVNDLSNFAHTAHHARKVVLAGNYLGLLIFELFIKK*
Ga0031684_1002867	Ga0031684_10028672	F027881	MSLTVARSERVRDVLTHASCTEIFILNFSSARVSNTLICFQ*
Ga0031684_1004153	Ga0031684_10041531	F027881	IMSLTVARSERVRSVLTHASCTEISINFSSVRVSNIQNCC*
Ga0031684_1009265	Ga0031684_10092651	F000049	MRHSKMAEWMENVEKAIARIMADKVYTSAEFKRERDNFQALCKDLERTEVKKWLNQILEILMAERAKSQQETENEKLNVLIKKHEELIPSVQKTSVMVDLYWKCYAYGDELKPHIEFLDGIMLSSTRDIAPSCVENVDELIERQEKSLVQLDSKKNIVVDLIAKGKVILEHPD
Ga0031684_1013363	Ga0031684_10133632	F019484	ILGGSLKKIAKKITTSVPISKKVYTNASIIYLSIY*
Ga0031684_1016401	Ga0031684_10164011	F010768	MKEVLNGGYNVHPVPPPNSEIKERIRRKYERKRIKIERLFTLGYTTSGDP*
Ga0031684_1024000	Ga0031684_10240002	F010686	LDLCGQAIKGTWGMSWRQEALKGVEDCEKLGEAVKRALIPRFLN*
Ga0031684_1155457	Ga0031684_11554571	F061786	NNTKGLYLCETIYPPDNGVSCIPPEKLEKAIKKGEIPPQVQADEEDLDGNMDEVIDNCIREVWQYYDPKGVGFLNKKQTQTFFKDALNLVALRKNCKSKDLFQGRKEGAALEEAFRQVNTSGDGRVTFEQFEEFINAYDLDEAVDLLTGGNSEHQINTQGVQMVDNSSLPSGGGPVKGKIEYRDYGALED*
Ga0031684_1162320	Ga0031684_11623201	F090278	SDLQSLWRSKREASEGLVDVDEDDFYEFLQQVNDNRHFRHNAMGNLTCVLHKCGQLTEDMEVNMDFYTTALRAEEPETGFTWDVEGSAAKDPEWREKIATAYEDCHDLAESWPATSLNRRPMTRMFGRQMIFFKCADRTERRVCTEAQLLENLETFYGSESDEETAERIAAIGLPEDKYDAAAISIAVIQ
Ga0031684_1182008	Ga0031684_11820081	F001716	HTDMLSIAAIGALSNTAEISSTNLRAAPAFDNIKASWNQALKLGDFNTNLKCNYDHSANRDFLKEVSLSGDLVEGGADDVSVSYEVSHDFSDKNTNVKLTANTQGTTLSAEYDRNNGIKEVSAERDVSIADQNVNVQPSWLVKAQTARVKLMSKLGDSKDSVSAQIDYDTNGKSSSYEVGYDHNIDAGRDVSATFNPDKKQLDVDYVDNKFESGATW
Ga0031684_1192364	Ga0031684_11923641	F010461	LTVQFFVIYVMIWVAVTVKEFTGWEWHFITNTMENAKGTLAFCPMLCILFVATRMRAMTLTQWKGAPQGWAQDGMYMATWSILLQFLMVLLIPLCTLVMEGKATQPELDEDGNVKWKPSGKIALICVQVVRWLGFVLLYVGANCVMVGAMTLTPETANGRGSVPLVRQTPF
Ga0031684_1193763	Ga0031684_11937631	F101008	KDDRMALEMSVNTMVTPYTFHMNAPYFLPRFFNDINRKTIDATIMHEMGSKLEVKSNCPEFETFIITTTGNKRSVVLNGKELTVVDFQRGARRISQTTELPSGEHLTTTVEWTEDSLKKNQATITVEVTPNRKFEGIFGWDFQTLSTGNFHFDVKGENPWVGNYAIDRHANWEMNKPRYMFNWVGKSEFKTGPFSSFSP
Ga0031684_1197521	Ga0031684_11975211	F046996	DEFSGFVDYFKAVREKIFGGYLDGIDFDWEGYCDAGCLKGTCICAWNDKICGTVTPEELAAGVFWDAPPVPGQKPMKHQCWIMPTTSTFQVMSGITHAMKREGFVVTLVPMSTSMYSGEADTSPKQVMRNEYVKYRMQTSFGQKVDLLDMADGILLQWYSGFDAALCVNTDVSSKACTCD
Ga0031684_1200074	Ga0031684_12000741	F000052	CFIEYEQIAFNETAEICRTPLVKDCDVQGPEICRTEYESECWTKQEVHDVEDDVVECTTEVEEKCEDETSGYTTNTKCSKWPREVCSVSKKPVKKYTPITGCTKEPRELCAPAGCGFKEGREECYEKTQTVVQDAPKEQCTLEPQRTCKHVTKLVPKLEPTEECVDVPKEVCTRSRTNPRKVKKPVVKKWCYVPTEESGLA*
Ga0031684_1206314	Ga0031684_12063141	F097173	SMQCVISLTIQYFLVYTALALVRTAADTFNVKYDNLPIQDILKTATYTVAYAPMLAVLFLGCRMRVTWLTQGKGNPPEYVQAAMYCSTYAVLAMTLCVCVIPVFTGKVFAVDPKTGDIPMDAKPFSNAALGVGFTVLKYLIMLGLYAGALVVVYGIINFEPPKGTWPGDKIPPVSPAVQCVMILSCQYFLVYGGIQVCKSVIEFAGDLFGYTHTLQEALNTATLSINFCPMLAVLFIGARMRALQMDPVN
Ga0031684_1208891	Ga0031684_12088911	F063613	FILLTMNLITSLLKKRGGERGSGLLVGLALKGSGGLLALVVGGSTNLSLLLQSLDGILILPSDLVGQTTEASEVAARSESQHTEGLRANHTVDLVVRRGDTLEDLEVSQSGGTTGGLVGDHSTDGSPENLRGSTEVERTTSGVDVASLSKEVLVLELVSEVRTRDVDVLATNNNDLLSGQELLGNSGGKTAQKVTLSVNHDSLLKHA
Ga0031684_1210502	Ga0031684_12105021	F051870	MNTMLSLSFLVVLLGQLTETMATTEVNASYNFLGYGSCRSADVSRYPNHYLKIGNVNREECVAQCTADQGCTHMEWGLNGHGQNQCVIFSPQQQQGIAPRGWIFVHGNGGQSITQANGWSSVSTCSAKVHPDPANYRFLGTGSCRSDNIFTYPNHYLKTDPTNALTRFACVNQCNSEVGCTHMEWGLNGNGEKQCVIFCPQCDPSMVPNGWAFVAGNGGTAITQGNSWSDVSKCFAKSMSCQDAQDGYLYTKKTNPKICYKDHTWRDYLTGYWGYEAVCGGAICEMEPGLALALTPQPYRSWWTPHCKVVQCKFGPRRLQEAKSGQLRGTFV*
Ga0031684_1212634	Ga0031684_12126342	F030135	ELATLSSFTDIGHSTFVGCQFPDAILPGEEAIDLVAGPLN*
Ga0031684_1214563	Ga0031684_12145631	F014836	KLVVVFLLAALSSLALAQCLLERNTCYEEEIYNGCFCFAEWNDANDVGNWTVNENWLQLMEPSWVHFVSISGDNTVTVDEERRINELYVGPNRWDTTRLVIDEDLTIVYDDVPVISRIQAYRLPTCQVRLIIQGKGFGFVSEDIAVVAEDFYEVDNDSNIDDMEPFTYVCNNPTLTYRDAKIECNLTAANIMPSALKVQVRANGYTTDFVLLSEYVQ*
Ga0031684_1229161	Ga0031684_12291611	F000075	FFALVAAVSATQYDSMTEDELLVNLESTLNSAQRSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0031684_1232933	Ga0031684_12329331	F006501	LMESHKIASDDIKARLDAIAKCEQQSREQDKGIQNHTATVVNNARVIHRDCRDKELRMTKDANEKCQFLDFLTVPAALPSESADRKAKLAYGNTMMGYWCNKDDQMKACAAATDALAPVVKECNKKQTQFESEFCAMAIVYHAQCQDLNDVCYTATRAAYDTSVASTTKLVAKWKVEYSALKKINCFLDVWLSDGDANTVSSEKLAACKATDADASVMNIDFGTPVKEFVCADAGFGTLPDYPGTPDFVTKEYGAWPELVQDVIHCHIEDPVAVSTTAGANTPAYR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300006705: Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP547 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences