3300006699: Metatranscriptome of deep ocean microbial communities from Pacific Ocean - MP2156 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300006699
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0092430 | Ga0031696
• Sample Name: Metatranscriptome of deep ocean microbial communities from Pacific Ocean - MP2156 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 70816377
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota	1
Not Available	4
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Pirellula → Pirellula staleyi	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii	1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Southwest of Acapulco, Mexico, North Pacific Ocean
• Coordinates
  • Lat. (^o): 12.0
  • Long. (^o): -108.08
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003495	Metagenome / Metatranscriptome	483	Y
F018908	Metagenome / Metatranscriptome	232	Y
F030135	Metagenome / Metatranscriptome	186	Y
F055666	Metatranscriptome	138	Y
F061786	Metagenome / Metatranscriptome	131	Y
F063613	Metatranscriptome	129	N
F065812	Metagenome / Metatranscriptome	127	Y
F082867	Metagenome / Metatranscriptome	113	Y
F087070	Metatranscriptome	110	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0031696_1007494	All Organisms → cellular organisms → Eukaryota	598
Ga0031696_1009926	Not Available	517
Ga0031696_1066824	Not Available	636
Ga0031696_1111007	Not Available	543
Ga0031696_1190348	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Pirellula → Pirellula staleyi	563
Ga0031696_1203562	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii	625
Ga0031696_1205445	Not Available	789
Ga0031696_1208745	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta	592
Ga0031696_1210363	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	604
Ga0031696_1210801	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	665

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0031696_1007494	Ga0031696_10074941	F065812	MGDILLPRLNIDGKPIANKYCEGKMKRTLERGLKDLKPLMRKE*
Ga0031696_1009926	Ga0031696_10099261	F030135	LATLSSFTDIGHATFVGCQFPDAILPGEEAIDLVAGPLN*
Ga0031696_1066824	Ga0031696_10668241	F018908	CTCDNIPADDYPNVLDTTKDAGGLLVSYWQTYWNISGNFFPSTFPVRCQACGKNVILPDGTRGDLPCASEEETWFVPSMNRTDKGANPPAVVSDHNMKMDAYAMKKHDIPRWWVKGMEINSKCPRGIDCPDFRYKGEEPYSRQIKLLKSLSKVVDLSKVSIGFETLGIDVQVQMQAWEDHALPWTTSPLKAYKPPTPYKNYTYYKPCTQNM
Ga0031696_1111007	Ga0031696_11110071	F055666	KDGKINAAEFDALCESVARLPRRFGLAPSWEVEYGGDVAKRTAARQKMFDAVDGMHGPTRGWIGCAQFIHWATAHVASKVTGTQVASVDFNHVTDYSKQDFLKAVDTAIHDPTSTDHANFYEFLLTVFVEEDHECKGVVNKAGFARLVDRAAHVPRHFGLAPPSADPTRLAELYDAMEDP
Ga0031696_1190348	Ga0031696_11903481	F087070	DTQNDCGKKALGISGIDHDKFTQCVQDGLSISAGCSECYYTVADYGFKNCKAACLLGWCKSGCLSCTQPAQDGLPGCTGFSPAVAEPCLETEVTGACGADDQAALADAKTVGEKQDACGKKALGLSGIDHDKFTSCIQSDLGISSGCSECYYTVADYGFKNCKAACLLGWCKSGCLSCTQPAQDGLP
Ga0031696_1203562	Ga0031696_12035621	F063613	YFILLTMNLITSLLKKRGGERGSGLLVGLALKGSGGLLALVVGGSTNLSLLLQSLDGILVLPSDLVGQTTEASEVAARSESQHTEGLRANHTVDLVVRRGDTLEDLEVSQSGGTTGGLVGDHSTDGSPENLRGSTEVERTTSGVDVASLSKEVLVLELVSEVRTRDVDVLATNNNDLLSGQELLGNSGGKTAQKVTLSVNHDSLLKHA
Ga0031696_1205445	Ga0031696_12054451	F082867	RSSRRVHHINDINHNDTNITVQYRVVKPLTFTTNTLILSVNPTLTELSNTLASIYRQYRVTELSFTFQCSDIAGPFALAMQYVPQIGGVPSAPPTTLAEFEGPAVGYCETGRGREYTYRVPSDILNAMGLNYYSTRVNVSPAQEPDILTQGLMVFLTSTPATPIIAYMHVKYEFQTLEDPSFLARLVNGDENEAKDTMIVPHPKNGAGEKLWN*
Ga0031696_1208745	Ga0031696_12087451	F061786	MGANNTKGLYLCETIYPPDNGVSCIPPEKLEKAIKKGEIPPQVQADEEDLDGNMDEVIDNCIREVWQYYDPKGVGFLNKKQTQTFFKDALNLVALRKNCKSKDLFQGRKEGAALEEAFRQVNTSGDGRVTFEQFEEFINAYDLDEAVDFLTGGNSEHQINTQGVQMVDNSSLPSGGGPVKGKIEYRDYGALED*
Ga0031696_1210363	Ga0031696_12103632	F065812	MGDILLPRLNMDGKPIANKYCEGKVKRTLKRGLKDLKPFKWKV*
Ga0031696_1210801	Ga0031696_12108011	F003495	VQASMKENNEKKIKNEDEISKLTKAPPKDTAALDKRSVLAKVNSQGSGI*