3300006691: Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP138 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300006691
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0092413 | Ga0031679
• Sample Name: Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP138 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 50044556
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. PgraA7	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: West of Cape Verde, Atlantic Ocean
• Coordinates
  • Lat. (^o): 14.52
  • Long. (^o): -26.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001679	Metagenome / Metatranscriptome	653	Y
F016402	Metagenome / Metatranscriptome	247	Y
F047706	Metatranscriptome	149	Y
F068737	Metatranscriptome	124	N
F092248	Metagenome / Metatranscriptome	107	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0031679_1006301	All Organisms → cellular organisms → Bacteria	947
Ga0031679_1011457	All Organisms → cellular organisms → Eukaryota	2904
Ga0031679_1103198	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex	563
Ga0031679_1114238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. PgraA7	519
Ga0031679_1118573	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales	612

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0031679_1006301	Ga0031679_10063012	F001679	VWGMSWCQEAMKGVEGCEKPGEAVKRALIPGSLNDRTLNT*
Ga0031679_1011457	Ga0031679_10114572	F092248	LLRLLLPLSDKVYLTSLIAKQFSPESLPDHSKSVGATGGVYKGQGRNRHQIMTDAY*
Ga0031679_1103198	Ga0031679_11031981	F068737	GGMCFMMFMSGAEEKLSCIERTACEDPYLATDYLTAAKMIYKGYKLVGMHIADKYATVMNSVNDALEYGKSGAECSAKYHW*
Ga0031679_1114238	Ga0031679_11142381	F016402	IKRLTNQGYNLQVMAANGLKEFLASERAREEAERLEFERQQKEKDRILRRIMDSNVRMMGVGFRQAYQWMEHDREKERILMLKQRGIMRRIVDKNARMVSAGYNKLIEEWKVRQNTLKEKLKFVIKALTDKDASYILAGYNGLKQRALMLSGVGMGDAAMKKIQLIKRLTNQ
Ga0031679_1118573	Ga0031679_11185731	F047706	GYGITSDPIRDVTSDHLFAATQIAVKEPWRVIGVDQSSCQVQDCAGFLTRKMRLSATGEMVTERITISEEKGEVTYNKCDASGRPSDVERVLAIRTPLRLEFYERSARSGMRVNWTAPYSMARDTFSNIVQIAKKIKSNSSDTIGFGVASKPLSASQDSLWKAMLFAMRNPADAGLKVTNVNVRDMSGFMQRSMCIVDKPGSPT