3300006689: Metatranscriptome of deep ocean microbial communities from South Indian Ocean - MP1240 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300006689
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0092403 | Ga0031669
• Sample Name: Metatranscriptome of deep ocean microbial communities from South Indian Ocean - MP1240 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 48665943
• Sequencing Scaffolds: 2
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: West of Perth, Australia, South Indian Ocean
• Coordinates
  • Lat. (^o): -31.13
  • Long. (^o): 110.21
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007220	Metatranscriptome	355	N
F030135	Metagenome / Metatranscriptome	186	Y
F042932	Metagenome / Metatranscriptome	157	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0031669_1009717	Not Available	725
Ga0031669_1104524	Not Available	685

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0031669_1009717	Ga0031669_10097171	F030135	KNREELATLSSFTDIGHATFVGCQFPDAILPGGEAIDLVAGPLN*
Ga0031669_1104524	Ga0031669_11045241	F042932	EKYDDQVEITKSDEEQDSYENTVAKSIDTLADVVQSIAESQQGVEKAITTIVERVKALETPSDLPLSPKGTQGGDDVGAKVTAPNDPYPVGDQVGLDSDRRSKNPPKKDPAGLKMQEKPVNKAVEDEPEEVVEESRPEMVTKSQHEFSTETPRPGSAPETVDKSFTKDFSPILKDARENGYEGLSIVAQNILSGKYYKPTPEEIGILIWSKYEPLMN*
Ga0031669_1115939	Ga0031669_11159391	F007220	SYWGYSAQQCQTWMNGELSRLNQEVADMQNAGSLTGRKKAAALAKGIKAQETLNKYSQCNVFWQPIDAAPLTSGGNGYVDGGDVDISNFERDNYPAAPLTDGTDGYSETKTLDATAPLTDGSYSETKTVDSAPLTDASYSETKTVDAAPLTDGSYSEPKTAPQIDAGEYTADSADLTGYV