3300006687: Metatranscriptome of deep ocean microbial communities from Pacific Ocean - MP2254 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300006687
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0092431 | Ga0031697
• Sample Name: Metatranscriptome of deep ocean microbial communities from Pacific Ocean - MP2254 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 42268451
• Sequencing Scaffolds: 9
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: West of El Salvador, Pacific Ocean
• Coordinates
  • Lat. (^o): 10.09
  • Long. (^o): -99.25
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000051	Metagenome / Metatranscriptome	3266	Y
F000073	Metagenome / Metatranscriptome	2639	Y
F006742	Metatranscriptome	365	N
F007073	Metagenome / Metatranscriptome	358	Y
F014836	Metagenome / Metatranscriptome	259	Y
F025479	Metatranscriptome	201	N
F063613	Metatranscriptome	129	N
F082867	Metagenome / Metatranscriptome	113	Y
F090434	Metatranscriptome	108	N
F092248	Metagenome / Metatranscriptome	107	Y
F093743	Metatranscriptome	106	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0031697_1000923	Not Available	821
Ga0031697_1017139	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida	543
Ga0031697_1051197	Not Available	774
Ga0031697_1083302	Not Available	644
Ga0031697_1091245	Not Available	666
Ga0031697_1100257	Not Available	608
Ga0031697_1103874	All Organisms → Viruses → Predicted Viral	1108
Ga0031697_1105674	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii	563
Ga0031697_1109637	All Organisms → Viruses → Predicted Viral	1026

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0031697_1000923	Ga0031697_10009231	F082867	MPRKRSSRRVHHINDINHNDTNITVQYRVLKPLTFTNNNLILSVNPTLTELSSTLASIYRQYRVTELSFTFQCSDIAGPFALAMQYVPQIGGVPSAPPTTLAEFEGPAVGYCETGRGREYTYRVPSDILNAMGLNYYSTRVNISPSQDPDILTQGLMVFLTSTPATPIIAYMHVKYEFQTLEDPSFLARLVNGDENEAKDTMIVPHPKNGAGEKLWN*
Ga0031697_1017139	Ga0031697_10171392	F092248	LLRLLLPLSDKVYLTFRDTAEAARSPKDSPDHSKSVGATGGVYKGQGLNQRRLMTCAY*
Ga0031697_1051197	Ga0031697_10511971	F007073	NRYGGQMYACPKGDRLYGVYSNAGFFIGRIEGRVVEGTWYEGGRGDRNDWQGAFRIELDADNQGFDGFYHRVTQDGTELRWKEERLGAPWPSNPTQDQCPVPGDEPLLGNFYNEAGQGRESAVYSLCKDEFDQIYGSFGSPDGFLEGWSVDDSTGFHGYRYDSNGRSGAYILRAVSDTVVKGFYWRGRLARQNIETSVPETLHITSYTSRLDDCERVGPGFLRRLRGPTAAAGTLNVSIVVVALVAFAALLF*
Ga0031697_1083302	Ga0031697_10833021	F025479	ATIRNMKVFVLLAAVCHFSHSAPQLLYGAYPYVHHAAAVVTGNSVPVAVGGYKAVAGDNGDLKGPVHEVPGLVPALAVHKQESDGAVSLSTGTGALVHTPVIGYYGKRSAEPQLLYSGLAHPYAAYPYAVPTVAVKPLTVNHEVVATGQAVPVAVGGYKAEAGDNGDLKGAVHEVPALFGAPALNKQENANGGALTVGTSAYLKTTISKREAEA
Ga0031697_1088532	Ga0031697_10885321	F000073	LKLARPFVAYMEENAWMRSLVDTGKGNLQWERDIPPAALSNLESLAAKDFKGNLGQIIHDIYQTAHLMFNDMPQGDHKNRAKYRFASKTLMRILPEANRKEVEGLIEKGSMTLDLYEILGTCTWVKPQ*
Ga0031697_1091245	Ga0031697_10912451	F093743	LDQLVSLWRNKRSVTKRDTEGLLSPDEDDFMEFLDDFDDFKEGMATKIGNLTCVMTELKMLTPELKVNIEYYTRSVEEDEDIDVSESEFLQDPEWLERLRTGYQDCYDISESIPSAALMGNPLTKVFGRQMIFFKCAKKTEHMNCALGQMKKWVEEWYGSKDNANATEYGFPEDSYEAAALSLMVLENAASEEERFVGDFFWGS*
Ga0031697_1100257	Ga0031697_11002571	F014836	RNTCYEEEIYNGCFCFAEWNDANDVGNWTVNENWLQLMEPSWVHFVSISGDNTVTVDEERRINELYVGPNRWDTTRLVIDEDLTIVYDDVPVISRIQAYRLPTGQVRLIIQGKGFGFVSEDIAVVAEDFYEVDNDSNIDDMEPFTYVCNNPTLTYRDAKIECNLTAANIMPSALKVQVRANGYTTDFVLLSEYVQ*
Ga0031697_1103874	Ga0031697_11038741	F006742	KTITSSGNMLRFLTLAALAISAYSDMGAMKKMHKDMMVFNSQSACWGKGNMIYFQVALKEAMESCMQENHSGLLKPANPILALLNQNANTLPFPVNNNNPFQSLPAPAPSKNPFKSSNLNLGAWNQLWNSRNKRQATEGLLQPTEEDFKEFLMDFEDFKGDVASKMGNLTCVLKKMNALDDNLQINMKEYTGDFWNKIDLSQTMAGEDPEWRNMLVTSYKDCYDIARSWPQSTLNRNPLMKVFGRHMVFFKCARKEEAKACGMACANDMLTTLYGSNDAFDWTQYGMPQNKYERAAWTMKIMYGTASHEEHFVHDFFFSDPMM*
Ga0031697_1105674	Ga0031697_11056741	F063613	GLLVGLALKGSGGLLALVVGGSTNLSLLLQSLDGILVLPSDLVGQTTEASEVAARSESQHTEGLRANHTVDLVVRRGDTLEDLEVSQSGGTTGGLVGDHSTDGSPENLRGSTEVERTTSGVDVASLSKEVLVLELVSEVRTRDVDVLATNNNDLLSGQELLGNSGGKTAQKVTLSVNHDSLLKHAWT
Ga0031697_1109637	Ga0031697_11096371	F090434	RGDNAKGGRDIHILTKKAGKQMMKVDISTEKQINDDQILIKLHDSVEIDNDSALYRRLVGNYRFLTPFNKRTGEYELFVNKKEKNVLLNKFYVKGQVMKDGQKVMNMLVTTNEKPYRVELFLPALLNKIYSDMDEYKMTVEHNPGQLLNVVTNGKKFKGFKISRTGNGNEREIEINGKKLGSGDYTLTDNSFSTKITNAAGDWLEPKITWEGALPKNKDEAANFFAQNNVKVHATGSKRNFDIDLSWKATKPDWDWSTPESMKMNLNIKGKGPRWGDYRLSRDVAIKVENKIIEWDLSGESHFGKGLMATATPIMTEIHLKYLIPQGDLQGKLSKVINGKEY
Ga0031697_1117180	Ga0031697_11171801	F000051	ADAQVFKDELNRIIKYVEELQANTKIECDKYSNDVKYWAEYRTGIKEFSPWLASAEKAATEGLSKPSDLDEVKALNDKVNSFDKTCVNYLKVLQAAEGASLKMTTHTEADNEVKALKERFDKVKAVSETWVKKCEVLVKEWVLLDNTVTELNSWVAKDKSAEGENQFSLEKMESTLGELKNIFKQK