3300006686: Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP0258 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300006686
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0092396 | Ga0031662
• Sample Name: Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP0258 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 50451721
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -3.03
  • Long. (^o): -27.33
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030135	Metagenome / Metatranscriptome	186	Y
F090441	Metatranscriptome	108	N
F101275	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0031662_1011345	Not Available	804
Ga0031662_1014561	Not Available	730
Ga0031662_1130311	Not Available	947
Ga0031662_1140195	Not Available	584

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0031662_1011345	Ga0031662_10113451	F030135	EELATLSSFTDIWHSTFAGCQFPDAILPGKEAFDLVAGPLN*
Ga0031662_1014561	Ga0031662_10145611	F030135	REELATLSSFTDIGHSTFVGCQFPDAILPGEEAIDLVAGPLN*
Ga0031662_1130311	Ga0031662_11303111	F090441	WELATLSFLDSLALGAPITRRVIIGCQFPDAASYRKNDSDMFRPHSGT*
Ga0031662_1140195	Ga0031662_11401951	F101275	ISDGLGGAPLFIDIEPFKYNYRIGLETLVVCTLNLWALYVKYCFFVYTLTLKCLAWGVWLQRLNLNRLAGVCLNGGACGLIR*