3300006685: Metatranscriptome of deep ocean microbial communities from South Indian Ocean - MP1371 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300006685
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0092424 | Ga0031690
• Sample Name: Metatranscriptome of deep ocean microbial communities from South Indian Ocean - MP1371 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 40785719
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: South of Port of Lincoln, Great Australian Bight, South Indian Ocean
• Coordinates
  • Lat. (^o): -39.24
  • Long. (^o): 135.14
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061786	Metagenome / Metatranscriptome	131	Y
F063613	Metatranscriptome	129	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0031690_1104802	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta	676
Ga0031690_1105646	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii	606

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0031690_1104802	Ga0031690_11048021	F061786	GANNTKGLYLCETIYPPDNGMSCIPPEKLEKAIKKGEIPPQVQADEEDLDGNMDEVIDNCIREVWQYYDPKGVGFLNKKQTQTFFKDALNLVALRKNCKSKDLFQGRKEGAALEEAFRQVNTSGDGRVTFEQFEEFINAYDLDEAVDFLTGGNSEHQINTQGVQMVDNSSLPSGGGPVKGKIEYRDYGALED*
Ga0031690_1105646	Ga0031690_11056461	F063613	MNLITSLLKKRGGERGSGLLVGLALKGSGGLLALVVGGSTNLSLLLQSLDGILILPSDLVGQTTEASEVAARSESQHTEGLRANHTVDLVVRRGDTLEDLEVSQSGGTTGGLVGDHSTDGSPENLRGSTEVERTTSGVDVASLSKEVLVLELVSEVRTRDVDVLATNNNDLLSGQELLGNSGGKTAQKVTLSVNHDSLLKHA