3300006682: Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP0325 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300006682
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0092397 | Ga0031663
• Sample Name: Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP0325 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 37262238
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii	1
Not Available	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: East of Recife, Brazil, South Atlantic Ocean
• Coordinates
  • Lat. (^o): -9.13
  • Long. (^o): -30.19
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007073	Metagenome / Metatranscriptome	358	Y
F037232	Metagenome / Metatranscriptome	168	Y
F063613	Metatranscriptome	129	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0031663_182185	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii	790
Ga0031663_190828	Not Available	923
Ga0031663_196311	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii	685

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0031663_182185	Ga0031663_1821851	F037232	MSAFKIYDLVNTVYGTGYVAAIRSDCYVVLLTHWKLAQGQSPTLYLQAEAMTLIPGALPGTVVKTPFGPAQLQSVRADNMHIAKPINWKLANNTIATMYLQPEVVQLTQTPGFNEGDEVMTVYGQGFVQSKREKEGDLVVLLRNWALAQGQSPTCYLHPSACVKIPGLQIGAAMKTVWGLMRLLSIRRDGTHVCEAMHWNLADGKPPRCYLAPEAFALVSIKP*
Ga0031663_190828	Ga0031663_1908281	F007073	RMKLVLLLLALFAVAYAVDAPGEGSVGSPDQVTNPADWHGTWSANNRYGGHMYACPHGNRLYGVYSNAGFFIGRIEGRTVEGTWYEGGRGDRNDWQGSFHIELSADNREFDGFYYRVSQDGAEIRWREERLGAPWPSNPTNAQCLVPGRDSVLGKFYNNPGAGRTPARYALCQDKYDQIYGSFGSPDGFVEGWSVDSSTGFHGYRYDSNGRSGAYILRAVSDSEVRGFYWRGRLARQNIETSVEEVLTRTSFNAHLDECERVGPGFLRRLRGPSNSAGALGFSLLAVVGAILFALF*
Ga0031663_196311	Ga0031663_1963111	F063613	FMYFILLTMNLITSLLKKRGGERGSGLLVGLALKGSGGLLALVVGGSTNLSLLLQSLDGILILPSDLVGQTTEASEVAARSESQHTEGLRANHTVDLVVRRGDTLEDLEVSQSGGTTGGLVGDHSTDGSPENLRGSTEVERTTSGVDVASLSKEVLVLELVSEVRTRDVDVLATNNNDLLSGQELLGNSGGKTAQKVTLSVNHDSLFIALGTLHDQEKQEARGSAPS