3300006612: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS904_Marker33_DNA

Overview

Basic Information

• IMG/M Taxon OID: 3300006612
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111355 | Gp0107629 | Ga0101558
• Sample Name: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS904_Marker33_DNA
• Sequencing Status: Permanent Draft
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 210579501
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal vent → hydrothermal fluid
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Axial seamount, northeast pacific ocean
• Coordinates
  • Lat. (^o): 45.9332
  • Long. (^o): -129.982268
  • Alt. (m): N/A
  • Depth (m): 1516

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040684	Metagenome / Metatranscriptome	161	N
F060979	Metagenome / Metatranscriptome	132	Y
F071317	Metagenome / Metatranscriptome	122	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0101558_1044925	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	647
Ga0101558_1120921	Not Available	909
Ga0101558_1346074	Not Available	600

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0101558_1044925	Ga0101558_10449252	F060979	VTTTTEDEQLASIALGDGDGGSQPPIQDDDSGGSFLTDPGTVAAAAGVAAAVGLGLSGLGSKLLGGLLRFLGGTSFGLFLIGLFRRDKRPGPPIDFTIFTDGPLTHLEWSSPTTGGPAEKDVLEGRKDGRWGELLDFDAENTRAAV
Ga0101558_1120921	Ga0101558_11209211	F040684	YTRRNFRLLINSNTHKEGKTMKRVIYLIILAMSLTLVFSQGKPCCKNKSGKGKVACKFNQANIDVNKDGTVIEDGTQIAAAGVQCPLSAQNTSINKKNCTNCAKSPWWKFWGKKKGCCNTNS*
Ga0101558_1346074	Ga0101558_13460741	F071317	MLKKITAVGLITLFTGVTAAPLIHLDECNMPCCAGLATSCCDMDQEVACPTISDCGSSIFVLIVSGPFHKSELKSSDIINQRFVTDLGIPKIETNYIACLGNFDPGPIASLNLPLLI*