3300006524: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 158479027

Overview

Basic Information

• IMG/M Taxon OID: 3300006524
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052545 | Ga0101033
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 158479027
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 154100708
• Sequencing Scaffolds: 25
• Novel Protein Genes: 28
• Associated Families: 24

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	4
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F032313	Metagenome	180	N
F033081	Metagenome	178	Y
F041827	Metagenome	159	Y
F046431	Metagenome	151	Y
F046432	Metagenome	151	Y
F047127	Metagenome	150	N
F051212	Metagenome	144	N
F051213	Metagenome	144	N
F055792	Metagenome	138	N
F058221	Metagenome	135	N
F061925	Metagenome	131	N
F061927	Metagenome	131	N
F063777	Metagenome	129	N
F064818	Metagenome	128	N
F068942	Metagenome	124	N
F071327	Metagenome	122	N
F071328	Metagenome	122	N
F077404	Metagenome	117	N
F078842	Metagenome	116	N
F089055	Metagenome	109	Y
F090516	Metagenome	108	N
F099454	Metagenome	103	N
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0101033_100002	All Organisms → cellular organisms → Bacteria	179210
Ga0101033_100003	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	178667
Ga0101033_100353	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	29662
Ga0101033_100548	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	23686
Ga0101033_101324	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	14683
Ga0101033_101395	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	14255
Ga0101033_101599	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	13154
Ga0101033_105139	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	6063
Ga0101033_106127	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	5271
Ga0101033_107112	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus	4653
Ga0101033_109021	All Organisms → cellular organisms → Bacteria	3768
Ga0101033_109442	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	3612
Ga0101033_114295	All Organisms → cellular organisms → Bacteria	2337
Ga0101033_114327	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2331
Ga0101033_115204	All Organisms → cellular organisms → Bacteria	2190
Ga0101033_115589	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	2132
Ga0101033_115821	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2098
Ga0101033_118184	All Organisms → cellular organisms → Bacteria	1797
Ga0101033_120926	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	1535
Ga0101033_121619	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1475
Ga0101033_122972	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1369
Ga0101033_125768	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1192
Ga0101033_134679	Not Available	823
Ga0101033_136161	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	781
Ga0101033_136370	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	774

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0101033_100002	Ga0101033_100002181	F046432	MQMTENELSEVISKFQMPEGRYSIEQEGSFGRGEFFWIIKNQSTNQKYLLMNTYSHHGVESELECYREEGFDNLEAIPRKIETLEIPSDAEDEISKYLFGFYSIFEIKS*
Ga0101033_100003	Ga0101033_10000317	F099454	MAFTFVFTSCDRLTDEPTLEDRGYKYFDSTAQRKSFRVVTASGKPYNHKIDWHIIGIRDSKSDTYLTKKVDTLSNGDLKISYDWISFTIREKKSVIDVEVQKNETGEDRSVKFVAQDNHKGLASPSMKVIQQAK*
Ga0101033_100003	Ga0101033_10000318	F051213	MKASKLLWAVVMALTFVFTSCDPFSQNEPTIEGDRYKYFDSSAQRQSFRVVNGSGKPYNHKVDWHIIGIQEENSDTYLTKKVDTLSNGDFIISYDWVTFTVKENKSVIDVEVQKNETGKDRSVFFATSNSYKQAYLPNMIVTQRAK*
Ga0101033_100003	Ga0101033_10000319	F051213	MKASKLLWAVVVALTFVFTSCDWVGDEPTIEGKLDKFFDSQAQRKSFRILTGSGKPYNHKVDWHIIGITDPYSDTYLTKKVDTLSNGDLKISYDWVSFTVRENKSVIDVEVQKNETGKVRAVYLNTNTSGRHITLPDMRVTQRAK*
Ga0101033_100353	Ga0101033_10035314	F055792	VEIAGEALDSTSAVAHRILLLTTQLGESLLASLRTEDGVIAEAMVTGALERDLAIDCALEEVRPVFVDESDDGTEAGTTWSRHPLETLQKEGYILFEGSMLPCKACRVDPRSSVKSLDLEPRIIGEAIEPVALPDVTRLDESIALQGIGSLRDLLMTPDVSETDYLQTSREEGTDLLQLMSIIARKYQLFHTFVS*
Ga0101033_100548	Ga0101033_10054810	F071327	MEDLFNSVYSTHKGISFSTVVVFGAFIFLILQVHLSYKGRISDVLRKTSFFSMILLYIQGILGVFLGIYSPEFSEASGFSSYFKLFEYGIIILTCAGMITYVYMFLKSNQILTLKVLIIALAAALLFEYAYPWRIIFG*
Ga0101033_101324	Ga0101033_10132419	F071328	MQGLICHVNEGCKMSRKHWTFINLIRYIEEYERNPLLIERMKWKFIPEGECIVEFVELCKHLVLERTIDSKESLTTAIYLRYSSQLLLKKKRAIRRLGIEKENISAILRQCGRHYKEYGDDEHRVFFLDTDVNIYFCKHYQLPIYILQRIEFSNKEYRPFILKVLPWKKDEW*
Ga0101033_101395	Ga0101033_1013951	F051212	MKKFFFIFVLYWLHSCNGTEKAMPTSPDTQKTSISEKQNTEKIERVIYESGGDKSGKNVHLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSEELIMDLPTTKIIIKTDKKEYSKTDIQANKTWDYITKQIIDIKYSQLNNHLNLEK*
Ga0101033_101395	Ga0101033_1013953	F047127	MKKTFAFILLSIISLAKAQQTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERRQAVRLWDKDIFYLEFTDRKMNKRVFRQIPELKKNGKLFEVMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDRPEIAKEVDQMVGDRDIREILEKYNSK*
Ga0101033_101599	Ga0101033_1015998	F064818	MGKRKKYPIPNNINGNTPKLYFINHKFIVVLLPYFTYMDKDEFLKKLIAFIADNSSELHPKIFKNKIRFGINKNSYTEMRFDYSQNYKGFYLQLASYNKEVGDFFEQEMGNSFLKMLEDESKEFRNLFFVQNSFQISHYYYGFPIMTNDNTGHLYPEMGTTIFNDILRNLQANHFKFIQAAEVLSPDLLHYIKKFPSCFFNTALVALLIIEKNLLSLNDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRR*
Ga0101033_105139	Ga0101033_1051399	F030786	MKRTKIHNVVFQMLVVMIVTGSLQLLLKNGSAAKGGNAMGAKKISLADITGGDDSETGVLKVKYFDDEGVDKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC*
Ga0101033_106127	Ga0101033_1061273	F061925	MSWEYSINLDSEEAVSSVVTDLKICELFSSSTTDYIDWKNPKSIDSTPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKQNYHLTDCDTDEEVTLEHIFRSVI*
Ga0101033_107112	Ga0101033_1071123	F089055	MNSTPECVTKTPEIEAREKLAAIFSDAKRYDGNSGVKPELGKAAIDGKDIKNIIKVNSADNEAVDLCNQALGSYGKSLDRINNSPLETVREIGDLLQSFREDKTKESCR*
Ga0101033_109021	Ga0101033_1090213	F078842	MIISSIYKTADNDGLIAHIYEHLLAQYVLKRLQDNEFFVLSDIILSAKTYGDTCFVDAELYSSEAKKTYDEALREFDKLVIPEYDILRAAGECGIEMNRNIVEVDRSELSKKLREVQISPWRKQIDMAYRKAHDESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHMQTPVDQALAAIVIQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLEKDDKIINQLSCDFLEYIKILSSSVFCDNLQKALVRCSDNHKQVILNRSVLNAILGGCVIGGKGWLEMASSAQIRRMINSIELDVYEVDL*
Ga0101033_109442	Ga0101033_1094425	F077404	MAQQIIMTHKLAAAALSLKEPTQIGNTQNPFAMNTLKTIFTCFFTLCFMMVANSYAQKTDSINTEAGKSVLHRNAIYIPPALEQYADTALLHQRFNVENKGNYLYTPFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKADKGFIILTSYLVVLGDSYAFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTHNDRIELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENRYTRGRKLILTDGHSTLYLYFLMIDSVAPNFDTEVLPYIKGVFRFNRFW*
Ga0101033_114295	Ga0101033_1142955	F046431	ITIVSILLIIMLTYTQILVFAAESELTLTPKPETNNIHLKWTGPQNSSYRVYQKKPGSSTFETIGLTDFSNTDEEVKVLNVYPVSIAEYNTPDVNVTYLDGSSETIPKSALLKVWMEGRNSYRRV*
Ga0101033_114327	Ga0101033_1143272	F063777	MKLLLYLCVPFLFIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEYLDDGYIFYRLTDEKSATELNGAIISEFQEDVGNYILLQNLILEDNQLKNQLISFNKNTGKITVLADIKDFFWLDFDSETKTINGYNNKEQIEITISE*
Ga0101033_115204	Ga0101033_1152042	F033081	MCPPDLMVVHRPRKGVMAWLFNRVMPTDSRPVFVWPKLVAAIEDTGNFGKRWLTAIATGLIIVTIATIKALLMIPGLDSSVVGLLTSIFETFLPARWATGAAWIVGTTGVFLMGNFTSYTKKQKSLQSLKATGCGMYNTLLLFALLEEQAFRSGSERWNWRERVRASVCFGLLHVTNIWYSFAAGIALSVTGFGFLMVYLWYYRKYRSQIIATAAAATVHALYNAIAISLIAVVVAVYLAIDIAKLL*
Ga0101033_115589	Ga0101033_1155891	F105380	MSILELDATQYVKQGRIFKKFDSNLLDSYMDGRQNNYNINLAELDDQISDGIVYADRNGKMIYKFGAKKIIQTAITNGLEISGLSKDLEMKHYSFWVPDLYFVSFYSFNPNEDLYIAYRSKDEEFICLTNIWPDGSSYAEDYFPNGDRLTLKRLCKGSMMSDVSSSDYDAWRNNAVTRASQFVNKFVSARGNSDLDFVGSALRSKVPSHNIKKCAVFLGTITKEQENVNTYEEFMEWTKNTKWFK*
Ga0101033_115821	Ga0101033_1158212	F041827	MKHFLSALALGCLLLSCNRDLENDETPAPAPQKEKLVLLKQLSEGSTVTFQYKNGNEIESVNIDGVGKSDIDYEYDTYGRIVKERRFHRRYDRGETNITYQYDNQGRLVSSHAISTKFYPGTGLTPRCSVEKKHTYTYQGNKVIVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIEQTIEYYNTKNALRNIKGFPALVVEFYIRPLTYELPYYNHGIERIEDLRYIDNIKTRDFHDGDYWEYRYRYDNGSTDNDYPNGVGIHARSHNDPTYDEYLYEISANRSYIKEE*
Ga0101033_118184	Ga0101033_1181841	F090516	PLSPLFGKNKMTTFERYFIENDEVISLDKSSEFTDVIVGIGFLPQDMSENTDFKKKTLEKYGFSSSTALADDFRKRVLNIDEPIPENFEKDGIGYVYTVISGYDTFYNRMYMFGIHCFNGDFNVTYFDLENDAETGDYYKEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKIDIKPIPEEEKVVPTQEHLAKFLAFCGVEQDVIDENKERLLKALEEYTPDEYEGVSEVMAEMMEYSHKIQRAEPVIEIIREYGVCRFSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLFPYMRKQLSLYHLWLCHLDEGADAYLFLLFSEKDMPEIMKLARILDLPLKAYFK*
Ga0101033_120926	Ga0101033_1209263	F058221	MGKIKNFQDLKNQKEELRAEIKEIESVLSFENPRKSFGVITNGVTEKYLGGMMDSSLAQNAFFLADKFLFPSLKVGSAKLLSNVLLKRTKPSMKKTLIGLGVVVLAPVVIMRIKKRLDDFQQRETAKSLSKLI*
Ga0101033_121619	Ga0101033_1216194	F046431	MKILKKITIVSILLIIMLTYTQILVFAVESELTLIPNPETNNIHLKWTGPQNSSYKVYQKKPGSSNFETIGLTDFNNVDEEVKVLNIYPTIEGLPMVNVTYLDGQTETIPKSGLLKVWMEGRNSK*
Ga0101033_122972	Ga0101033_1229721	F061927	LNYIIMKNPIFILSAMFILGACSSESAKKAYNDSFRKTFIEEGVKSCIENSGLKESEAREYCECAMNKINENLSNDEIIDISMDNPPKDLDERIDKAISSCVENKP*
Ga0101033_125768	Ga0101033_1257683	F046431	KKITIICILIAIILTYMQTLVMAAESKLTLTPKLETNNIHLKWTGPQNSSYRVYQKKPGATQFETIGLTDFSNNAIDEEVKVLNIYPQESNTDGRLWPTLNSSQVANIAKVLPKVQVTYLDGQTETIQKTALLKVWMEGRNSK*
Ga0101033_134679	Ga0101033_1346792	F032313	MYRLLILLFAITLMACDNDTPQEKPREQEKHEVPVPKPKPQFDEVGERIWYGQTPAMRLDSTDYGAGLTRVLEMRTSSIPKQRFDSLFKQTVWEIKDICAVETDLSLAKKIPKFVGGSITKEFTCRNGVILRHMQGIDINLVDTVNYVYNEDLNEIVLEGTGIRWYVLRLNKYAVEFLQQGHNIWGPFDWYYGRNSGRSEVMLEAK*
Ga0101033_136161	Ga0101033_1361611	F089055	MNSTPKCVTETLEIKAREKLAVIFSDAEQRDNSKVNPELGKTAIDIENTSRMNSADDGAVYLCNQALGSYGKSLDYINNSPLEAVQAIGNSLQLFREDKTKESCR*
Ga0101033_136370	Ga0101033_1363702	F068942	MIRKILSLPTLALCFTLCTALFAGCGENYDGSVTEVHWSNVKNPEYGNAINIMLKAEGETFTTVGNHSWISFSNDASTLDTFTRHRFPEVDKDTAYYKDIVIYMTRNERERTTTLKLVAPPNRTQQPKQFKFS