3300006522: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 809635352

Overview

Basic Information

• IMG/M Taxon OID: 3300006522
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052546 | Ga0101034
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 809635352
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 120337333
• Sequencing Scaffolds: 11
• Novel Protein Genes: 11
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae	1
Not Available	5
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F041827	Metagenome	159	Y
F054111	Metagenome	140	N
F057446	Metagenome	136	N
F064818	Metagenome	128	N
F070224	Metagenome	123	N
F077403	Metagenome	117	N
F085821	Metagenome	111	N
F097526	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0101034_100532	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae	20417
Ga0101034_104534	Not Available	4737
Ga0101034_108234	All Organisms → cellular organisms → Bacteria	2820
Ga0101034_113148	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1831
Ga0101034_117202	Not Available	1400
Ga0101034_123596	Not Available	1008
Ga0101034_123979	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	991
Ga0101034_127142	All Organisms → cellular organisms → Bacteria	869
Ga0101034_135251	Not Available	650
Ga0101034_140559	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	551
Ga0101034_141311	Not Available	538

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0101034_100532	Ga0101034_10053213	F077403	MKIIMPIYRGLPLAILLLSAMSAIYAEERISVHFEVRWRRERNPIDTLRRELDVPYLHVVYQNRTDTAYYLVRQDQSNWIFPRLRYYTVIEAIPRTEELSLTHYVPRWATFMLDARGAELRKRKVLTRQVLLQDQAWEVELEPSILDGKPKPRITYEEGISNWSELAYYLQGYLYYLMNPQQAHDWYQVPYLPDHAMHSVATEAVVTEGKLRPYVHRLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWQASARLRDEGTSLNVYLFRDQEAPTSPQGSALPDHYEGYQLYQGQVRGDSIWIEM*
Ga0101034_104534	Ga0101034_1045341	F022002	MSRRLALTLGLLLALLLSLPSHAXXXXPHAQDGRSKVPINRTISGFTLGVTTTAEARAIIQRQGGKIEDTQAGSDEEVYVIMGLKYARRSTLSVGLYFYKGHLRRIAFVFNNLDVLEQIESELVDKYGTMAEGVGTSKEKVKGIVDAFTTLEVVRRFDYEGHIGFECAYIAYTDEELERAYSAETESEI*
Ga0101034_108234	Ga0101034_1082346	F097526	MQHFSAQPDETTAIAPYTQDGYRRLCERLDDDTVAALLHAHIRAFAADGNRQRLNRLTEAMRIAGEMEKAGRNEHPDPAEQKRRARWDSNLAGLQQQARMAHCEIVNADNAAVSQLTQQCEKNGSCDTAIPSPHDDGYGFTAGLRDIPLNTSQTALLWRIALLTIAEMTDTAPSLVACYLNGTGGEHLGRALVEKTVYPVTVVSNLARLLHEQHKSGQLQRDLRHIAAREPENAAVMPAVAPEPVVTLQAAEQPEITIHNPTTGATL*
Ga0101034_113148	Ga0101034_1131482	F041827	MKHFLSILALGCLLLSCNRDLENNETPAPPKEKLVLLKQLSKGSTVTFQYKNGNEIESVNIDGVGKSDIDYEYDTYGRIVKERRFHRRYDYGETNITYQYDNQGRLASSHAISTKFYPGTGLTPRCSVEKKHTYTYQGNKVIVKIEMGTDTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIKQTIEYYNTKNALRNIKGFPALVVEFYIRPLTYELPYYNHGIERIEDLRFIDNIKTRDFHDGDYWEYRYSYDKENTYNGDYPNGVRIHARSHNDPTYDEYLYEISADRSYIKEE*
Ga0101034_117202	Ga0101034_1172022	F070224	YRPPPGPVYLPAMGGDPIPPLASPLKSGHTPGSKIRTRDWVKVDFSDQNNLHIMGFGDSLILENSFVYKADRYPNAKEYELYYKGTGEEITKEDFDSIKFSRMPTALREIKKYKLPRTRRFSGEVDRWQHPNLFVIEHDKKAGRYYKYRIALVIYMDYNHPEVCIIH*
Ga0101034_123596	Ga0101034_1235962	F022002	DGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIILEVGIHAGSKDASYIVSGLNYARRPTQTVDMFFYKGHLCSIYFGFDGWDVLEQIESELEDKYGMMIESEGMFKKKGIVDAFTSLEVVRTFEYEGHVRIDHAYIAYTDEELERARSAEKESEI*
Ga0101034_123979	Ga0101034_1239791	F064818	MGERKKYPIPNNINGNAPKLYFTKHKFIVVLLPYFTYMDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNREVGDFFEQEMGNAFLKMLEDESKEFRNLFFVQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK*
Ga0101034_127142	Ga0101034_1271422	F054111	MNKPLESITHNEFLKLTERLKNLQEFTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLFLETEALSTADRDLFLNILDKEILFLI*
Ga0101034_135251	Ga0101034_1352511	F022002	GREPINRPISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARRPTLSVRLYFYKGHLRSISFTFGDLKIFEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEYDGHVGFAYAYISYTDLELDRAYSAENENEI*
Ga0101034_140559	Ga0101034_1405592	F057446	MNSISFGKTTITSYPEYFEITDNKKTSKLLYLSASFVFIAIYLFDLYQNDFDFGKVPYFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWASIVIHYGD
Ga0101034_141311	Ga0101034_1413111	F085821	FTFLVYDFFVAGNMPAVQLCIDYLVAQGYPTAENEKKFLNWIFMEPVYYLKYFISDASTQKKLHHDLLNLWYESTKRQILEHDKGKHDEVYIDAWVKANVNKTLSIIRSGETIASRKEDVVELAESLNDEYELNISLLDEYCRALLYTAETTQSQQELVAQTQNHIALLKDLYKKVNKI