3300006461: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 158742018

Overview

Basic Information

• IMG/M Taxon OID: 3300006461
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052490 | Ga0100060
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 158742018
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 121570612
• Sequencing Scaffolds: 23
• Novel Protein Genes: 24
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → Cardiobacterium valvarum	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium JJC	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F040685	Metagenome	161	N
F047127	Metagenome	150	N
F051212	Metagenome	144	N
F057446	Metagenome	136	N
F058221	Metagenome	135	N
F059076	Metagenome	134	N
F061925	Metagenome	131	N
F061926	Metagenome	131	N
F061927	Metagenome	131	N
F063777	Metagenome	129	N
F064818	Metagenome	128	N
F071327	Metagenome	122	N
F080165	Metagenome	115	N
F085821	Metagenome	111	N
F089056	Metagenome	109	N
F090516	Metagenome	108	N
F095632	Metagenome	105	N
F097525	Metagenome	104	N
F097526	Metagenome	104	Y
F101358	Metagenome	102	Y
F101359	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0100060_100112	All Organisms → cellular organisms → Bacteria	43415
Ga0100060_100719	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	19179
Ga0100060_101238	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	13912
Ga0100060_101654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → Cardiobacterium valvarum	11417
Ga0100060_102657	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	8020
Ga0100060_103702	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	6082
Ga0100060_104806	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	4885
Ga0100060_105176	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	4560
Ga0100060_105992	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	3971
Ga0100060_106322	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	3777
Ga0100060_106868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3495
Ga0100060_107257	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3313
Ga0100060_107302	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	3289
Ga0100060_108116	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	2949
Ga0100060_109030	All Organisms → cellular organisms → Bacteria	2643
Ga0100060_109858	All Organisms → cellular organisms → Bacteria → Proteobacteria	2423
Ga0100060_111614	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2038
Ga0100060_112268	All Organisms → cellular organisms → Bacteria	1921
Ga0100060_115023	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1529
Ga0100060_117341	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1296
Ga0100060_124757	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	875
Ga0100060_134898	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	603
Ga0100060_140451	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium JJC	504

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0100060_100112	Ga0100060_10011211	F095632	MSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGVGSSVLGTYVGDKAGRQYAETFAETIDSMKTPQTN*
Ga0100060_100719	Ga0100060_10071912	F051212	MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKGVYLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTNIQNNKTWDYITKQIIDIKFSKLYNHLNLEK*
Ga0100060_100719	Ga0100060_10071913	F040685	MKKLLFKLFFALAFTSISLHGQEKIQQVEVHIFGGMALYSSHYTINFLYKEFEAKQVMGEPAELPKKILQLNPPDKWRVFTKKINLDKFKKLRDGPSEQTVDGQDEVIIIKTDKKTYRKMNASGNDRDREVWYDLLQIIAKEFGKKGVYE*
Ga0100060_101238	Ga0100060_10123810	F071327	MEDLFNSVYSTHKGISFSTLVVFGAFIFLLLQVHLSYKGAISEVLRETGFFSMMLLYIQGILGVFLGIYSPEFSETSGFSSYFRLFEYGIIILICAGMITYVYTYLKKHQKLNLKIVIIALASALLFEYAYPWRLIFG*
Ga0100060_101654	Ga0100060_10165414	F097526	MTENSTMATTIYTQDDYRRLCERLDDDTVAALLHAHIDAFAADGNRQLLKRLTEAMRIAGEMEKAGRNGHPTPEEQARRERWDNQFRELQQQARMAHCEIVNADNAAVSRLTAQCERNGRSDTELPVARNDAYGFAAALRDIPLTAPQINLLWRMAVLTIAEITDATPSLVAHYLNGIGGEHLGRALAGKTVYPVTVVSNLAWLLHEQ*
Ga0100060_102657	Ga0100060_1026578	F061925	MSWEYSINLDSEESASSVVTDLKICELFCSSTTDYIDWKNPKSIDSIPYDARFYTDNKKTIYIAINSFSKNIFSALNLILAKHDYHLTDCDTDEEVTLEHIFRSVI*
Ga0100060_103702	Ga0100060_1037026	F090516	KKILKKYGFSSATALAEDFRKRVLNFDEPIPENFEKDGIGYVHTVISGYDVFYNRMYMFGIHCFNGDFNVTYYDLENDAETGDYYEEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKLDIEPIPAEEKVTSTQEHLAKFLAFCGVEQEVIDENKERLLKTLEEYTPDEYEGVSEAMAEMMEYTHKIQRAEPVIEIIREYGVCRSSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLFPYMRKQLSQYHLWLCHLDEGADAYLFLLFSEKDMPEIMKLARRILDLPLKAYFK*
Ga0100060_104806	Ga0100060_1048063	F097525	MQQKKIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFEQISADKEKSTEIDFIEPELAFEYQNKKLIVLLCYDIAPVSYGEEPYQLTFPLDDKTLAMIIKELGEAVASFKKV*
Ga0100060_105176	Ga0100060_1051764	F101358	MTEKYSASLPPRQPEHLLTQPITTDGMPKERTTHPDTHSIPKRDDVPQYLWNVLRSSGQLDEGWVDVEIITEDGVTLIRMAKPVNRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGVMIKDGRLQPVADTTHATRQNDSTDEQETEVLPAQGGDTHEYRSGDSARQLVGSVAAKASDTEVDNSPLVERVLGRVE*
Ga0100060_105992	Ga0100060_1059924	F061926	MMIKTAKHIKTFLASVLLLIFVMNVSGLFVRLYHQETHQKTEKIAECSDKACYHKAHLQTKNDCDCGFLCTLNYFYILPEKPLTEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS*
Ga0100060_106322	Ga0100060_1063224	F063777	MKVLNIKISALPPENNSFWMKLLLYLCIPFLFIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPYENSQEYKIFNDFCAKSNEHLNDDDGYIFYKLTDEKSATDLNEAIISEFQEDIGNYILLQNLILEDNQLKNQLISFNKNTGKIIVLADIKDFFWLDFDSETKTINGYNNKEQIEIAISE*
Ga0100060_106868	Ga0100060_1068681	F097526	LPALLHAHIRAFAADGNRQRLNRLTEAMRIAGEMEKAGRNEHPDPAEQKRRARWDSNLAGLQQQARMAHCEIVNADNAAVSQLTQQCEKNGSRDTAIPLPRDDYGFAAAVRDFPLSETQTALLWRMALLTIAEIADIAPELAAIYLNGTGGEHLGRALVEKTVYPVTVVSNLARLLHEQHKSGQLQRDLRHTAAASGLAGTEAMQAAVPVSRQQDGRQSS*
Ga0100060_107257	Ga0100060_1072573	F064818	MDKDEFLKELIAFIADNSSELHPKVFKNKIQFGINKSSYTEMRFDYSQNYKGFYLQLASYKKEVGDFFEQEMGNAFLKMLEDESKEFRNLFFAQNSFQLSHYYYGFPIMTNDNTGHLYPEIGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK*
Ga0100060_107302	Ga0100060_1073025	F089056	IISCSKRKEADNTKTLEKNYAFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPNRRFKDKEKIVFMYYINSCCDNGQLLEECDISFIAITFTNKNEILFRKGIQ*
Ga0100060_108116	Ga0100060_1081164	F058221	MKNKMGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKTLGVITNGVTEKYLGGMMDSGLVQNAYFLANKFLLPSLEAGSAKLLTNALLKRVRPSMKKTLIGLGVAVLTPIIIMQIKKRLDNFQQRETAKSLSKLI*
Ga0100060_109030	Ga0100060_1090301	F030786	MKRTRIHKVVFQMLVVMVVTSSLQMLLKNGSATKGGNTMGTKKISLADITDGDDSKEGVIKVKYFDDDGADKIFENNNNKILNTINSQHISFNSQSAEYSKPQLFLLYRSLKVDC*
Ga0100060_109858	Ga0100060_1098584	F097526	LTEAMRIAGEMEKAGRNGHPDPAEQARRVQWDCQFTVLQQHARMAHCEIVNADNAAVSRLTRQCEQNGSCDTAIPSPHDDGYGFTAGLRDIPLNTSQTALLWRMALLTIAEMTDTAPSLVACYLNGTGGEHLGRALAEKTVYPVTVVSNLAWLLHEQYKSGQLQRDLRHTAATSGLAGTEAMQAAVPVSRQQDGRQSP*
Ga0100060_111614	Ga0100060_1116142	F057446	MNSISFGKTTITSYPEYFEIADNKKTNKQLYLSASLVFIAIYLFDLYQNDFDFGKVSHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWASIVIHYGNKKRKIDGFSQEEAEQIIKFLMNNR*
Ga0100060_112268	Ga0100060_1122683	F061927	SIFILSVMFILGACSSDSAQKATEKIKNAYSDGLRKTFIKEGIKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNPPKDLDERVDKAIGSCIGE*
Ga0100060_115023	Ga0100060_1150231	F101359	NLIFKMKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQHQSSNPRNSAVNGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTSFTSYTGQDFTDSYKETVK*
Ga0100060_117341	Ga0100060_1173411	F059076	CDLKFTLMTNKILLLGLLLGGVSINAQVINETKAAGKTGQKVGINTTIPTRTLTIKNSTANDGKPLLRLVDAPIYSKNIRSDMDADLGGNTATTTNYTDYRPLVVDKVGDVYKGLPIHNMSILTLTIDKVNGDYIRKFDTGIDYNKYAVAIMSYSFKMPAPASGGIVMLRGGSNTPSVAHGGNKYGVTTAPATVLLTKTGSNWGIYADYPNIGSYEFTSGSTAIGNLVDGTWVITLLVGKRDAVNFTEIKFDQNGQPEGIGPNNTTYTTQLDNFLKKLE*
Ga0100060_124757	Ga0100060_1247572	F085821	MSNIFEQLAPLAETKKQQTTVAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYLVAQGYPTAENEKKFLNWVFMEPVYYLKYFISDASTQKKLHHYLLNLWYESSKRQLLEQDKGKHDEAYINAWNEANVNKTLSVIRSGETIASCKEDVAKHSRTLNDEYEQNVNLLDEYCRALLYTAETTESQQELVAETQSHIALLKDLYKKVNKIK*
Ga0100060_134898	Ga0100060_1348981	F047127	FAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGNEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDSDIREILEKYNRK*
Ga0100060_140451	Ga0100060_1404511	F080165	ACNNKTKTISTLELEKTIINYKDLPSKVKERVFYGEAMKLGEEDEERFQDFQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIDKDGPMGGRYIIYGDSLYISNHYNIYEEDSLKYTFTRYILR*