3300006459: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159369152

Overview

Basic Information

• IMG/M Taxon OID: 3300006459
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052504 | Ga0100222
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159369152
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 106442564
• Sequencing Scaffolds: 23
• Novel Protein Genes: 25
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	2
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473 → Alloprevotella sp. oral taxon 473 str. F0040	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 275	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F033081	Metagenome	178	Y
F040149	Metagenome	162	N
F040685	Metagenome	161	N
F042387	Metagenome	158	N
F046432	Metagenome	151	Y
F046433	Metagenome	151	N
F051211	Metagenome	144	N
F051212	Metagenome	144	N
F051213	Metagenome	144	N
F054109	Metagenome	140	N
F064819	Metagenome	128	N
F066860	Metagenome	126	N
F068942	Metagenome	124	N
F071328	Metagenome	122	N
F072446	Metagenome	121	N
F080164	Metagenome	115	N
F084362	Metagenome	112	N
F094007	Metagenome	106	N
F097527	Metagenome	104	N
F103430	Metagenome	101	N
F103432	Metagenome	101	N
F103433	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0100222_100252	Not Available	35100
Ga0100222_100307	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	30645
Ga0100222_100782	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	15257
Ga0100222_100882	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	13935
Ga0100222_100891	Not Available	13894
Ga0100222_101079	All Organisms → cellular organisms → Bacteria → Proteobacteria	12226
Ga0100222_101305	Not Available	10605
Ga0100222_101562	Not Available	9247
Ga0100222_101604	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	9071
Ga0100222_102729	All Organisms → cellular organisms → Bacteria	5912
Ga0100222_103553	All Organisms → cellular organisms → Bacteria	4793
Ga0100222_104237	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	4178
Ga0100222_104239	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4176
Ga0100222_105091	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473 → Alloprevotella sp. oral taxon 473 str. F0040	3599
Ga0100222_105210	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3511
Ga0100222_105893	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3141
Ga0100222_105955	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus	3114
Ga0100222_108857	All Organisms → cellular organisms → Bacteria	2175
Ga0100222_111070	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1744
Ga0100222_112087	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1601
Ga0100222_114027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1395
Ga0100222_115766	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1239
Ga0100222_125203	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 275	771

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0100222_100252	Ga0100222_10025218	F084362	MSLMNCTFTVRWSDDKNKAHAKTYDTEDDAKRAKKWLLEHGVRDVDVAVKINNKPAGSLKDDKQSEAAAEQKGFWWQE*
Ga0100222_100307	Ga0100222_10030716	F080164	MRSTSFVLSVLLWMVGLTLCAAPQVTLRERASAFPLITEKDESEIIAPYAWRLPVVPLSLDNREIRNFAKYPALPSLSGGKLTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGLGVRTAPKLFGIKGMHVYGVQKDGSRQAVDKQVTLHLPGFEKAEKPLLYKGQTGRLVLCEYYESHRGDLFLDVANARPEIFGELRPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPARS*
Ga0100222_100307	Ga0100222_10030717	F103432	MKLIHSLFSLSLLLALSGLFCTTACQDDAEPTQRAGLISTDSLIHAAKVYDGKAFEHVVSTTATGLRVSEPRRVVPMLPRQLQVEMVGKTLFRRHSLPSVSAYSFQVLAVGDTIYRQKESDAQFNADLDALFHQSIGIAPRLFGVKELSVLGIDSRGKTHDLGNYSYPLLQGKIKNVNYRTREGVFHEHYEAASVDTFSVKDDWLLKTKAEPSLYVPSFRLLVWDQPADDYTKLRFTLTLVDGRSLVAEVPLY*
Ga0100222_100782	Ga0100222_10078213	F051212	MKKFFFIFVLYWLHSCNGTEKVNADTIKTSISEKQNTEKIERIIYSETGGDTGGKNVHLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTDIQNNKTWDYITKQVIDIKYSQLYNHLNLEK*
Ga0100222_100782	Ga0100222_10078214	F040685	MKKLLFKLFFTLAFASISLHGQEKIQQVEFSSFGGMALYSSRYTLNSLKKEFSAKPLMGQNEDLPKEISLPNTPKNWEAFTKKINLDKFKKLRDGPSQQAFDGQDEVIIIKTDKKTYRKMNASGNDHDRKVWYDLLQIIAKEFGKKSIYE*
Ga0100222_100882	Ga0100222_1008823	F068942	MIRKILSLPTLALCFTLCTALFAGCGENNLGFVTEVRWSNVKNPEYGEYINIRLKAEGETFTTVGDHSWISFSNDASTLDTFTRHDIPKVDKDTAYYKDIVIYLTRNEREQTTTLKLVAPPNRTQQPKQFKFSVSVTPPAMYMFKVHQPALPAKAQ*
Ga0100222_100891	Ga0100222_10089122	F084362	MSLMNCTFTVRWSDDKNKPHAKTYATEDDAKRAKKWLLEHGVRSVDIAVKINNKPAGSLKDDKPSDTEAEQKGFWWEK*
Ga0100222_101079	Ga0100222_1010795	F103433	MIFVMKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMGQDCNPSQVKPYVSQYGLQARVIAGLSPNDTSKIPAYIKRVSIFLAVLTAFLLALVVQKIRVLFGGITASVFVVMLAFSPWIAGYARNIYWIEPLLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELVHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFISLTDYYGSSDKAASAINARASDRGISGIRSMRAYAVGNFKILRPETYNFINQIVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFIQSILFWTILGYLIILSFRKIIGKKYSRPFLWSMNFSVIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYVLIGLWADYVVKRTVKYE*
Ga0100222_101305	Ga0100222_10130515	F054109	MVGRPKSKKGTKVHTAFKIYPADKERAQNMADKLGMSLSAYINKAVLEKVERDEKSEN*
Ga0100222_101562	Ga0100222_10156211	F103430	MKLITIKAFIGSNNETKELEIDKIASTLSKNHEAFTLQYPVFGYWKGETEQTAILYLSDERSKVMNTLNELKEVLDQEAIAYQIQDKLNLI*
Ga0100222_101604	Ga0100222_1016041	F040149	EVLIEEQGIPVLFVEVVAWYDGRVSSSEILRSVGVALEREPRLAPVWSHDSEDAIHDFVYDISVPKGHTLTAVRERETVVAQLLNIHRYVYYP*
Ga0100222_102729	Ga0100222_1027293	F030786	MKRTKIHNVVFQMLVVMIVTGSLQLLLKNGSAAKGGNAIGAKKISLADITGGDDSEIGVLKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC*
Ga0100222_103553	Ga0100222_1035535	F071328	MSRKHWTFINLIRYIEEYERNPLLIERMKWKFIPEGECIVEFVELCKHLVLERTIDSKEPLTTAIYLRYSSQLLLKKKRAIRRLGIGKKNVSAILRLCGIHYREYGDDEHRVFFLDTDINIYFCKHYQLPMYIIQRIEFSNKESRPFILKVLPVKRSEW*
Ga0100222_104237	Ga0100222_1042374	F042387	AGLFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENKKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKANYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYHYNGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPGGHFYLNPNNMVVVDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDEDENTIADYLNFRWVSHNPALIQKSTNLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVIMMVYEYNK*
Ga0100222_104239	Ga0100222_1042393	F051213	MALTFVLTSCDPFSQNEPTIEGNRYKYFDSSAQRQSFRVVNGSGKQYNHKVDWHIIGIQEENSDTYLTKKVDTLSNGDFRISYDWVTFTVKENKSVIDVEVQKNETGKDRSVFFATSNSYKQAYLPNMIVTQRAK*
Ga0100222_105091	Ga0100222_1050914	F072446	MKKLVFLLFGLCLYCFTACDSDHEPTKPVRPFHGDTLAQIAWNFPYIVEEHYHSIPGIVPEGTTYRVPVIPRSVEDRTKKEYNERDVDKVAHLVFRATVHGDTLNRHKKEFETLARQLHALTLPTIGTSPVLCGVKSIKAVGVAENGITYDLRWEMKLRIRDYSSRAEYNSGRLVTLDCEDTESMTARYVVVLGEIRKTELAEHIQPELKFYLPVKRCMDFSSIRFDITLFNGEVLSFQHKLPSKSVLQELPNNSVLENYKQYGFEREATYFTTLWPVPEKEIGR*
Ga0100222_105210	Ga0100222_1052107	F094007	MKLKTVEVLELARPNRAGAIDVVDSDGNVVPLDYLGEDFVPDANSYSDEDFTKRNRIIVEMCDLFGRIRRRAGFAERHRGRGDYDRARRIERNRGSDISEVGRLAINACEACPLKLDCELYGKLGGAVLSDVLDYKKVRTATSLTKAGKKRSGWNKGCIDNNA*
Ga0100222_105893	Ga0100222_1058934	F064819	MILKDSQGKDRIKFSDIVRLNKEEPVFVKMKVHISTETMISEENLDIERSDLEDLTRNLKDLCECKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDESYMNSINFSFQTDLNGIATFSKEISQELKKYK*
Ga0100222_105955	Ga0100222_1059554	F066860	MTTKKQKLQKQQAIDTWIVIALWVSAIWFSLARGLITGIGGWVLALLGPWALIVSCICLAIISRQMKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFKTSKTIAIISGFVVVLSLFVAVTFGIAEDKE*
Ga0100222_108857	Ga0100222_1088572	F051211	MRVKKAIKVFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEHILKIRRQQYERHVILRVFIDEFAYDVDPSIDIGLTPMLPMACWDGKSSTTTMAPLRYLRVYRPHSLHERILSQLRRKIFRSNPESFYTAIDIWLATIRVS*
Ga0100222_111070	Ga0100222_1110702	F033081	MHTDITVVYRPKKGVMAWLFRRVMPQDARPTFVWSRLVTEIENTGYFSRRKFSILAVGLIIMTIAMIKMLLFVPGLNQSVVSLLTRGLETFLPTGWATVTAWTVGMAGVFLMGDFTNYTPSQKFLHKIKATRYEMYNILLLLALLEEQAFRSGSEKWNWRERVRASVCFGLLHIMNIWYNFATGIALSATGFGFLLVYLWYYRKYRIQIIATAAAATMHALYNAIAISLIAVVLAIDIAKLL*
Ga0100222_112087	Ga0100222_1120872	F046432	MWEMTENELSGIISKYQMTEGRYSLEEEGSFGESEFFWVIKNQSTNKKYLLVNTYSHHGVESELECYREGGFDNLEAIPRKIETLENASDADDEISKYLFGMYSIFEIKS*
Ga0100222_114027	Ga0100222_1140271	F097527	MIYFKMEKIGNSRYNKEKKTRSENLVFNTIPAAGVEPARPC
Ga0100222_115766	Ga0100222_1157661	F046433	MIELLTSPDALSELSPVAPPKLLSQAQDTSRDNLMVYVKADNYLGTETSDPSFMESRCETTEYEAINDFVQFIEMTKHYLPDYMEDCAKELIDELAFLGMPELNFAANALAKRLGHHLEVGNKPVYIDVGNSLSQYRAKNEMKSSQYILSLVLSKFPDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIVSGDQVRERIAGFEVDNDPESHEASVLVMAASGDYLDNGISAYSQYGGTIYPVEACYVLKNSPDAGGMSRVTGIHSSTDNTFGYEVDGIAYCAIERGILKGEGIDALSLPALANIVRPYRNGKNFDGLSRFRQLLERE*
Ga0100222_125203	Ga0100222_1252032	F071328	MSRKHWTFTNIIRYIEEYERNPLLIERMKWKFIPEGECIVEFVELCKHLVLERTIDSKEPLTTALYLRYSSQLLLKKKRAIRRLGIEKENISAILRQGGRHYKEYGDDEHRVFFLDTDVNIYFCKHYQLPMYIIQRIEFSNKKSRPFILKVLPVKRSEW*