Sample 3300006365

Basic Information
IMG/M Taxon OID	3300006365 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046783 \| Gp0111636 \| Ga0068674
Sample Name	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_1100 MetaT (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_1100 MetaT (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	104333861
Sequencing Scaffolds	18
Novel Protein Genes	21
Associated Families	17

Dataset Contents

Total Genome Size

104333861

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	14
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Herpetosiphonales → Herpetosiphonaceae → Herpetosiphon → Herpetosiphon geysericola	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Roseilinea → unclassified Candidatus Roseilinea → Candidatus Roseilinea sp. NK_OTU-006	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Herpetosiphonales → Herpetosiphonaceae → Herpetosiphon → Herpetosiphon geysericola

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Roseilinea → unclassified Candidatus Roseilinea → Candidatus Roseilinea sp. NK_OTU-006

Ecosystem Assignment (GOLD)
Name	Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Ecosystem Assignment (GOLD)

Name

Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → microbial mat material
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

aquatic biome → hot spring → microbial mat material

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.963	Long. (^o)	-110.715	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Yellowstone National Park, Wyoming, USA

Coordinates

Lat. (^o)

44.963

Long. (^o)

-110.715

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002229	Metagenome / Metatranscriptome	580	Y
F004307	Metagenome / Metatranscriptome	444	Y
F004791	Metagenome / Metatranscriptome	423	Y
F005631	Metagenome / Metatranscriptome	394	N
F008499	Metagenome / Metatranscriptome	332	Y
F010840	Metagenome / Metatranscriptome	298	Y
F012577	Metagenome / Metatranscriptome	279	Y
F021779	Metagenome / Metatranscriptome	217	N
F050404	Metagenome / Metatranscriptome	145	Y
F056643	Metagenome / Metatranscriptome	137	N
F065815	Metagenome / Metatranscriptome	127	N
F070164	Metagenome / Metatranscriptome	123	N
F073601	Metagenome / Metatranscriptome	120	Y
F081941	Metagenome / Metatranscriptome	114	N
F085749	Metagenome / Metatranscriptome	111	N
F098323	Metagenome / Metatranscriptome	104	Y
F101227	Metagenome / Metatranscriptome	102	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0068674_1007180	Not Available	3372	Open in IMG/M
Ga0068674_1024700	Not Available	504	Open in IMG/M
Ga0068674_1034218	Not Available	2789	Open in IMG/M
Ga0068674_1035376	All Organisms → cellular organisms → Bacteria	1408	Open in IMG/M
Ga0068674_1040163	Not Available	1500	Open in IMG/M
Ga0068674_1041047	Not Available	753	Open in IMG/M
Ga0068674_1045459	Not Available	514	Open in IMG/M
Ga0068674_1055971	Not Available	738	Open in IMG/M
Ga0068674_1057378	Not Available	1099	Open in IMG/M
Ga0068674_1063286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Herpetosiphonales → Herpetosiphonaceae → Herpetosiphon → Herpetosiphon geysericola	713	Open in IMG/M
Ga0068674_1065180	Not Available	1996	Open in IMG/M
Ga0068674_1066228	Not Available	817	Open in IMG/M
Ga0068674_1068520	All Organisms → cellular organisms → Bacteria	962	Open in IMG/M
Ga0068674_1126346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Roseilinea → unclassified Candidatus Roseilinea → Candidatus Roseilinea sp. NK_OTU-006	540	Open in IMG/M
Ga0068674_1166666	Not Available	751	Open in IMG/M
Ga0068674_1172674	Not Available	2368	Open in IMG/M
Ga0068674_1177319	Not Available	552	Open in IMG/M
Ga0068674_1181020	Not Available	784	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0068674_1007180	Ga0068674_10071801	F065815	MQPETNNPNPQANQPTKPTEETSVTDAKKNNTSTPEVEQQSKSGFYQDLNSVLLVTILSLLIYTIVGSGLSWIVSWGLAQANLYPWVFNQSPILLWAIFGLVSMLIIGVTMVQVESLVETRILPKLQKFSQPTLLLVNFLVLMGLILGMYWLVSNFVNYLNITFWLK*
Ga0068674_1017695	Ga0068674_10176951	F085749	MTEIVMNQSELAAEIAARLRDEVAAAVKAQRVGVATELDEDTAETGASFGDFLKSVAYNDTRRLRAIYKSSKALDETTGAGGGFLVPTQFEQRIRAVGAPMLFDQL
Ga0068674_1024700	Ga0068674_10247001	F004307	VKLGDSNDERPVLNGAYIGRFLGVKERQRPTFDTRLNPEPELEDVFVFEFEVDDEELPHPIRVAKWVRKPPQLSHPGKNGKVSNLYKVIAALYGVSQMTDEQLQNAEEFVTSVIGREYQLTIETKPSGWYEIIHIAPVRRARRKEVMSGNEEVPF*
Ga0068674_1034218	Ga0068674_10342181	F073601	GRAMLQAKATCLVMALPAKRREGQRMFWVLHFAWCCAIKIIECGSIIRPLPVEKRALAGKGVLLQQG*
Ga0068674_1035376	Ga0068674_10353761	F073601	LGWQGRLVGAGCPLLGMSLALGRAMLQAKATCLVMVLPAKRREGQRMFWVLHFAWCCAIKIMECGSIIRPLPVEKRALAGMGVLLQQE*
Ga0068674_1040163	Ga0068674_10401632	F070164	MWAENGLNLGPDWYFHNCNDRSDTGPAGISPRKFDLSDYCNVYGSGQHQIAGFQLGRDRRNEIEAAYKFCFKRGFPIDAGQVMQENLNYSSNATREAWNYNNPVYAGKIPLGDLNREFTVGDFYPSCSSHECEARTQLLVKHPCMAMYLNTAADTWDGFNDNWGNAQVIVSALHYYILDLKNGAS*
Ga0068674_1041047	Ga0068674_10410471	F081941	YSDYKLEITTAIFFVLNFLLSIPTGFTATQFELSPSLKLLLDTIYMMTGSIYLVLAAGVFYMDLEVNKILAKRYTRWSVIVFSIFFYLISLETERYSMELNILLTFTGINSLLILVIMFADLKSLLNPYPNYQGKTNSIEIISFLLLSTTILIGKTLHLVLMLNIFG*
Ga0068674_1044905	Ga0068674_10449051	F098323	MLKNKFWVLLVIFALFGFINTSIPVWTQENTTTQFDNAILAKNQQLIVPIGRADTSVDPACKNLINEIVKCDSGNGSCVVLKFRKATEDDKERYRQLTENAKKCVGSNSNNLDDRQKLDLINKVCLVLPAASSNDRTFFCQACIGRGVTKPSNWTDQDIVDKCNSTIPANNSSKKLVNRKIDQNGQVKE
Ga0068674_1045459	Ga0068674_10454591	F004791	MPEPATIYDVDAVRVDRSVLTIREAATLLNRELAAPVIARLVRKAIGDQADRFPIRALKAVYERVLPQIFEPDAAIRARVEGLVPNVTTITLGEYHQFLEASERGIAFPEVTQTLLTKAYGDGILEEPYAAAALLLKKIFDLVGEEGKG*
Ga0068674_1055971	Ga0068674_10559712	F056643	GMGRGVADTATALVEYIEDYVAKLRFAWLQRGDVQLINVSGVVDVVKYGERAYEGVTMTTRFAHLVRSPSV*
Ga0068674_1057378	Ga0068674_10573781	F101227	PNMTPKSVSAYYVAILFTTVLFQLDGLRWLVISIQQWLISGLQSVTTLPITATIYWIVLFLVTAIITSLFKFFIIDPLELHANDDQTRDWWVWLFALLVFGLFIYTLNLNFNQSMPLELPKFLVKIFQGSRNTPGAEINSLAESNFYSIFPWLWQVGPVIFMYYYASQEKSKKASSS*
Ga0068674_1063286	Ga0068674_10632861	F005631	MKLNVAVDIDNALRKLLPQTARIEAALDAGAAAAHSVMQIYPPPPAGSRYQRTGNLRQKLRIKKLSRTTRIVENTASYARFVYGMPQARVHRGRWASVVDAAEAARVEAEKVLRGR*
Ga0068674_1065180	Ga0068674_10651801	F008499	VGTKKSRSEPRWKRKEREVIKFLQAAFGRVSDPTLARLLTRTGRVGHLTRFGFDGIVGNEPGFIVEVKARKGMLAKQTIEALLQTVDRAAQFGRIPLLAVVLGDDVPARTASGAKVDREWVLIPLRELKRLVGKEVSYE*
Ga0068674_1066228	Ga0068674_10662281	F081941	FIISGFHFILIQLSNLPYSDYKLEITTAIFFVLNFLLVIPTAFTATQFELSPSLKLLLDTICMMTGSIYLVLAAGVFYMDLEGNKILAKRYTRWSVLVFLFFFFIIAMETVRRSMELNILLTFTGINLLLILVIMFADLKSLLNPYPNYQGKTNSIEIISFLLLSATILIGKTLHLVFVSSIFG*
Ga0068674_1068520	Ga0068674_10685201	F085749	MTEIVMNQTELAAEIAARLRDEVAAAVKAQRVGVATELDEEGADVGASFGDFLKSVAYNDTRRLRAIYKSSKALDETTGAGGGFLVPTQFEQRIRAVGAPMLFDQLVAANRGPLTLRTNAAELALPVLEQ
Ga0068674_1114744	Ga0068674_11147441	F050404	FDPTYRKIAECVRKKYTQNNGNKTTIAGFPTSFFSYDTNAIKTRIQECSGLNIIDSDLVTVVSCLDGIELIPGVGWNQVRPDRLRQCMLATKDTLGIHRQAFVDCVIRNRFNSQTKYLDKDISSGVEKLCVNEQKQAFVFPKNTDYYNGLIYCLDHDKSKPEFLKEKSEWVWRKDTDNLDAATLRSPNCPHLIKEFSHLTMKNPK
Ga0068674_1126346	Ga0068674_11263461	F021779	LICIAKQIYDKDAAAINTGAGDPDAVSRQSLGYNGINLSDAKTEIFLPIAWRINAQSTCGFWRYTGLIVQNAGASNANVTVRAYNNAGALINTWNDPNPLGPFTPRGYNTRFNAGSGYGTDSAVIAALGANFDGTLRLTSTQPLVAVAESWQNCNSGSSPMTDSNITELN*
Ga0068674_1166666	Ga0068674_11666663	F002229	VTLLTADGVEEIDYLPSDAEIRTSLDDAGLYGMVVDGVTWIRLSSGVGWWTVLAGRRVAATLAALGWCWVTDDGRGYWSPTLASVASEACAMLGVEVDDGD*
Ga0068674_1172674	Ga0068674_11726743	F012577	TIWRGQIERIEETTDGSITWHALGFGALQRDARISVVQNMSDMSRWRPVGSGFIPPSAGYDSRPDLWEYEIVSVGGLAQMRIRTKKAFTITTYDLLFLAYLYDQPERYFRIRAYENIRVTSIAYTNLAVGVLIAPITAVPQPDAYTFTLGTFTLQPAPGTVIETNCYGWIVGVLAPGNETTAGDTSVTFHVTVNNTGAYSGHAIDEGLLTSALTGRGGCCDIKLPTGTNVSIAKPDANLREIVEQSTDEYAQVRYRRKRFIRDRTLPTIDFRADSPLVWRFPETTRVVDISKAPNRVFGQYRGYWTDHLTATTTILPLESRRQSLAWRVASVGEYGSKAIAEARRDEAAAAFDRQIAPITIELDNARYELMTREGITVPNWAADVSDYAIVPGYFRNAKITSRTISRERTTYTVSFDPDDFVNALR*
Ga0068674_1177319	Ga0068674_11773191	F004307	ERKGRMFKELITHNSGRERPALNGAYIGRFLGVSERERPTFETRNDPQPEYEQVFVFEFEVEDHELDAPVRVSKWVRKPARLSHPGKGGKVTNLYKVLSALYGVPQMTDEQLANAEDFVQNVAVGREYQLTLETKPSGWIEIVHIAPTRRLRQRKEATIDEVPF*
Ga0068674_1181020	Ga0068674_11810201	F010840	APSGEREREVNRMNLPFDKPLNKVTNGALAAALVVVVAWALREFVGVDLPAEVQSALALIVGFGISYLVPLSAAEAEAIAQAYYRK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300006365: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_1100 MetaT (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences