3300006365: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_1100 MetaT (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300006365
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046783 | Gp0111636 | Ga0068674
• Sample Name: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_1100 MetaT (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 104333861
• Sequencing Scaffolds: 18
• Novel Protein Genes: 21
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	14
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Herpetosiphonales → Herpetosiphonaceae → Herpetosiphon → Herpetosiphon geysericola	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Roseilinea → unclassified Candidatus Roseilinea → Candidatus Roseilinea sp. NK_OTU-006	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.963
  • Long. (^o): -110.715
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002229	Metagenome / Metatranscriptome	580	Y
F004307	Metagenome / Metatranscriptome	444	Y
F004791	Metagenome / Metatranscriptome	423	Y
F005631	Metagenome / Metatranscriptome	394	N
F008499	Metagenome / Metatranscriptome	332	Y
F010840	Metagenome / Metatranscriptome	298	Y
F012577	Metagenome / Metatranscriptome	279	Y
F021779	Metagenome / Metatranscriptome	217	N
F050404	Metagenome / Metatranscriptome	145	Y
F056643	Metagenome / Metatranscriptome	137	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0068674_1007180	Not Available	3372
Ga0068674_1024700	Not Available	504
Ga0068674_1034218	Not Available	2789
Ga0068674_1035376	All Organisms → cellular organisms → Bacteria	1408
Ga0068674_1040163	Not Available	1500
Ga0068674_1041047	Not Available	753
Ga0068674_1045459	Not Available	514
Ga0068674_1055971	Not Available	738
Ga0068674_1057378	Not Available	1099
Ga0068674_1063286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Herpetosiphonales → Herpetosiphonaceae → Herpetosiphon → Herpetosiphon geysericola	713

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0068674_1007180	Ga0068674_10071801	F065815	MQPETNNPNPQANQPTKPTEETSVTDAKKNNTSTPEVEQQSKSGFYQDLNSVLLVTILSLLIYTIVGSGLSWIVSWGLAQANLYPWVFNQSPILLWAIFGLVSMLIIGVTMVQVESLVETRILPKLQKFSQPTLLLVNFLVLMGLILGMYWLVSNFVNYLNITFWLK*
Ga0068674_1017695	Ga0068674_10176951	F085749	MTEIVMNQSELAAEIAARLRDEVAAAVKAQRVGVATELDEDTAETGASFGDFLKSVAYNDTRRLRAIYKSSKALDETTGAGGGFLVPTQFEQRIRAVGAPMLFDQL
Ga0068674_1024700	Ga0068674_10247001	F004307	VKLGDSNDERPVLNGAYIGRFLGVKERQRPTFDTRLNPEPELEDVFVFEFEVDDEELPHPIRVAKWVRKPPQLSHPGKNGKVSNLYKVIAALYGVSQMTDEQLQNAEEFVTSVIGREYQLTIETKPSGWYEIIHIAPVRRARRKEVMSGNEEVPF*
Ga0068674_1034218	Ga0068674_10342181	F073601	GRAMLQAKATCLVMALPAKRREGQRMFWVLHFAWCCAIKIIECGSIIRPLPVEKRALAGKGVLLQQG*
Ga0068674_1035376	Ga0068674_10353761	F073601	LGWQGRLVGAGCPLLGMSLALGRAMLQAKATCLVMVLPAKRREGQRMFWVLHFAWCCAIKIMECGSIIRPLPVEKRALAGMGVLLQQE*
Ga0068674_1040163	Ga0068674_10401632	F070164	MWAENGLNLGPDWYFHNCNDRSDTGPAGISPRKFDLSDYCNVYGSGQHQIAGFQLGRDRRNEIEAAYKFCFKRGFPIDAGQVMQENLNYSSNATREAWNYNNPVYAGKIPLGDLNREFTVGDFYPSCSSHECEARTQLLVKHPCMAMYLNTAADTWDGFNDNWGNAQVIVSALHYYILDLKNGAS*
Ga0068674_1041047	Ga0068674_10410471	F081941	YSDYKLEITTAIFFVLNFLLSIPTGFTATQFELSPSLKLLLDTIYMMTGSIYLVLAAGVFYMDLEVNKILAKRYTRWSVIVFSIFFYLISLETERYSMELNILLTFTGINSLLILVIMFADLKSLLNPYPNYQGKTNSIEIISFLLLSTTILIGKTLHLVLMLNIFG*
Ga0068674_1044905	Ga0068674_10449051	F098323	MLKNKFWVLLVIFALFGFINTSIPVWTQENTTTQFDNAILAKNQQLIVPIGRADTSVDPACKNLINEIVKCDSGNGSCVVLKFRKATEDDKERYRQLTENAKKCVGSNSNNLDDRQKLDLINKVCLVLPAASSNDRTFFCQACIGRGVTKPSNWTDQDIVDKCNSTIPANNSSKKLVNRKIDQNGQVKE
Ga0068674_1045459	Ga0068674_10454591	F004791	MPEPATIYDVDAVRVDRSVLTIREAATLLNRELAAPVIARLVRKAIGDQADRFPIRALKAVYERVLPQIFEPDAAIRARVEGLVPNVTTITLGEYHQFLEASERGIAFPEVTQTLLTKAYGDGILEEPYAAAALLLKKIFDLVGEEGKG*
Ga0068674_1055971	Ga0068674_10559712	F056643	GMGRGVADTATALVEYIEDYVAKLRFAWLQRGDVQLINVSGVVDVVKYGERAYEGVTMTTRFAHLVRSPSV*
Ga0068674_1057378	Ga0068674_10573781	F101227	PNMTPKSVSAYYVAILFTTVLFQLDGLRWLVISIQQWLISGLQSVTTLPITATIYWIVLFLVTAIITSLFKFFIIDPLELHANDDQTRDWWVWLFALLVFGLFIYTLNLNFNQSMPLELPKFLVKIFQGSRNTPGAEINSLAESNFYSIFPWLWQVGPVIFMYYYASQEKSKKASSS*
Ga0068674_1063286	Ga0068674_10632861	F005631	MKLNVAVDIDNALRKLLPQTARIEAALDAGAAAAHSVMQIYPPPPAGSRYQRTGNLRQKLRIKKLSRTTRIVENTASYARFVYGMPQARVHRGRWASVVDAAEAARVEAEKVLRGR*
Ga0068674_1065180	Ga0068674_10651801	F008499	VGTKKSRSEPRWKRKEREVIKFLQAAFGRVSDPTLARLLTRTGRVGHLTRFGFDGIVGNEPGFIVEVKARKGMLAKQTIEALLQTVDRAAQFGRIPLLAVVLGDDVPARTASGAKVDREWVLIPLRELKRLVGKEVSYE*
Ga0068674_1066228	Ga0068674_10662281	F081941	FIISGFHFILIQLSNLPYSDYKLEITTAIFFVLNFLLVIPTAFTATQFELSPSLKLLLDTICMMTGSIYLVLAAGVFYMDLEGNKILAKRYTRWSVLVFLFFFFIIAMETVRRSMELNILLTFTGINLLLILVIMFADLKSLLNPYPNYQGKTNSIEIISFLLLSATILIGKTLHLVFVSSIFG*
Ga0068674_1068520	Ga0068674_10685201	F085749	MTEIVMNQTELAAEIAARLRDEVAAAVKAQRVGVATELDEEGADVGASFGDFLKSVAYNDTRRLRAIYKSSKALDETTGAGGGFLVPTQFEQRIRAVGAPMLFDQLVAANRGPLTLRTNAAELALPVLEQ
Ga0068674_1114744	Ga0068674_11147441	F050404	FDPTYRKIAECVRKKYTQNNGNKTTIAGFPTSFFSYDTNAIKTRIQECSGLNIIDSDLVTVVSCLDGIELIPGVGWNQVRPDRLRQCMLATKDTLGIHRQAFVDCVIRNRFNSQTKYLDKDISSGVEKLCVNEQKQAFVFPKNTDYYNGLIYCLDHDKSKPEFLKEKSEWVWRKDTDNLDAATLRSPNCPHLIKEFSHLTMKNPK
Ga0068674_1126346	Ga0068674_11263461	F021779	LICIAKQIYDKDAAAINTGAGDPDAVSRQSLGYNGINLSDAKTEIFLPIAWRINAQSTCGFWRYTGLIVQNAGASNANVTVRAYNNAGALINTWNDPNPLGPFTPRGYNTRFNAGSGYGTDSAVIAALGANFDGTLRLTSTQPLVAVAESWQNCNSGSSPMTDSNITELN*
Ga0068674_1166666	Ga0068674_11666663	F002229	VTLLTADGVEEIDYLPSDAEIRTSLDDAGLYGMVVDGVTWIRLSSGVGWWTVLAGRRVAATLAALGWCWVTDDGRGYWSPTLASVASEACAMLGVEVDDGD*
Ga0068674_1172674	Ga0068674_11726743	F012577	TIWRGQIERIEETTDGSITWHALGFGALQRDARISVVQNMSDMSRWRPVGSGFIPPSAGYDSRPDLWEYEIVSVGGLAQMRIRTKKAFTITTYDLLFLAYLYDQPERYFRIRAYENIRVTSIAYTNLAVGVLIAPITAVPQPDAYTFTLGTFTLQPAPGTVIETNCYGWIVGVLAPGNETTAGDTSVTFHVTVNNTGAYSGHAIDEGLLTSALTGRGGCCDIKLPTGTNVSIAKPDANLREIVEQSTDEYAQVRYRRKRFIRDRTLPTIDFRADSPLVWRFPETTRVVDISKAPNRVFGQYRGYWTDHLTATTTILPLESRRQSLAWRVASVGEYGSKAIAEARRDEAAAAFDRQIAPITIELDNARYELMTREGITVPNWAADVSDYAIVPGYFRNAKITSRTISRERTTYTVSFDPDDFVNALR*
Ga0068674_1177319	Ga0068674_11773191	F004307	ERKGRMFKELITHNSGRERPALNGAYIGRFLGVSERERPTFETRNDPQPEYEQVFVFEFEVEDHELDAPVRVSKWVRKPARLSHPGKGGKVTNLYKVLSALYGVPQMTDEQLANAEDFVQNVAVGREYQLTLETKPSGWIEIVHIAPTRRLRQRKEATIDEVPF*
Ga0068674_1181020	Ga0068674_11810201	F010840	APSGEREREVNRMNLPFDKPLNKVTNGALAAALVVVVAWALREFVGVDLPAEVQSALALIVGFGISYLVPLSAAEAEAIAQAYYRK*