3300006349: Human stool microbial communities from NIH, USA - visit 1, subject 159146620

Overview

Basic Information

• IMG/M Taxon OID: 3300006349
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052486 | Ga0099714
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 159146620
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 72084246
• Sequencing Scaffolds: 4
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055775	Metagenome	138	N
F074964	Metagenome	119	N
F089005	Metagenome	109	N
F090484	Metagenome	108	N
F092228	Metagenome	107	N
F099406	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0099714_100023	Not Available	148588
Ga0099714_100200	All Organisms → cellular organisms → Bacteria	41917
Ga0099714_102018	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	4656
Ga0099714_104546	Not Available	2096

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0099714_100023	Ga0099714_100023147	F099406	MAEIGYNSKFEGQEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDHVTKQYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGDGKVLESLGMVSTGVDSTYLDLSMFSGNSGTLDEASFAKVLDAYNNNITLGKLDGDYYYLNYFLEGNDFENNFKLKIVFASFANTDSAVGASEYDIEIQVGTFVVIQDKTYEAMNNMVTLSNTILSYLNFMAMPPRVVTTLANLPKYAHNIIANVASATSLSMTVSSEYAGREWQVRVNNTTGTDITQPLPTSGQFQSMSGDSVIVPKNSFIELSIWYINDKLVIRVGEQA*
Ga0099714_100023	Ga0099714_100023167	F090484	MKLQLGRNINISLRLLEQWSDDSLFMELYALYCMIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFNELFRMTDSTFVARRYRVNGVQLTLGCGKVNLPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENVQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWDLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLSAEEVVSEDGEILGIDRKKTKEEEARSLASSMAKEAHKDFWDGYERSTQNQIVRKYYRAIIAEDKKRRMDMFLNCLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKSYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYMYVKAEQFKEKIENMDISIQSLPNINTTVDNDKELDGESVFKDIPFEELSFYNDTYLYPISQYSSL*
Ga0099714_100023	Ga0099714_100023190	F074964	MITKKNVNKLQNAVIKENASNLVGAVKLYNALFANGADLKAVCKTLEIPAEYTVKVAALAKDKKRLVAVCSQMLPKVGDTFVKFSLYSKVYKDSKVDKEKGIEAKTADWCADNVVYGSEYKPFGFATSETLETKSSAKWIIKETDEYKSTYVAVKIKSYSIRTVAKCVSEYLAHESNQQ*
Ga0099714_100200	Ga0099714_10020022	F055775	MAQIAQQDNLVIEVTTTAAALDGATKKKLIECIEGGTITDVILVTKEVGKKISHARVVSWSVDTTGDSPKYTIHIINADSGVVAAIALN*
Ga0099714_102018	Ga0099714_1020182	F092228	MKKKCTLVLISVLTVACIVSAYLLFFYNSSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGSLINDNLFYINGDKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKDSDTLENIGDIKFDNQIYYINISDGNLYTAERIFEDKTDEYGYSLKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCQDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIILKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATRNFLYCYTINYILPRGVANSWVKSYLIDQLVIS*
Ga0099714_104546	Ga0099714_1045462	F089005	LTKSKQRSIIALALLRLATSNEESKQALKVRRTLKIEQRDNSKETRNDFEESSKNYSEMYTKKHQELRI*