3300006317: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 370425937

Overview

Basic Information

• IMG/M Taxon OID: 3300006317
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052482 | Ga0099674
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 370425937
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 173045865
• Sequencing Scaffolds: 23
• Novel Protein Genes: 29
• Associated Families: 26

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	7
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 278	1
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces timonensis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → Viruses	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F030786	Metagenome	184	N
F040685	Metagenome	161	N
F043990	Metagenome	155	N
F047127	Metagenome	150	N
F051212	Metagenome	144	N
F051213	Metagenome	144	N
F054111	Metagenome	140	N
F055792	Metagenome	138	N
F057446	Metagenome	136	N
F058221	Metagenome	135	N
F059076	Metagenome	134	N
F061925	Metagenome	131	N
F061927	Metagenome	131	N
F063778	Metagenome	129	Y
F064819	Metagenome	128	N
F070224	Metagenome	123	N
F076191	Metagenome	118	N
F084362	Metagenome	112	N
F085821	Metagenome	111	N
F089056	Metagenome	109	N
F090516	Metagenome	108	N
F095630	Metagenome	105	N
F101359	Metagenome	102	N
F103430	Metagenome	101	N
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0099674_100078	All Organisms → cellular organisms → Bacteria	85991
Ga0099674_100251	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	48510
Ga0099674_100326	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	42746
Ga0099674_100435	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	36260
Ga0099674_100756	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	26361
Ga0099674_101067	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	21334
Ga0099674_101079	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	21151
Ga0099674_101099	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 278	20871
Ga0099674_101227	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	19380
Ga0099674_101895	Not Available	14245
Ga0099674_102477	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	11691
Ga0099674_102594	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	11168
Ga0099674_102752	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces timonensis	10678
Ga0099674_103071	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	9815
Ga0099674_103134	All Organisms → cellular organisms → Bacteria	9656
Ga0099674_105526	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	5966
Ga0099674_108542	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	3875
Ga0099674_108997	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3675
Ga0099674_109878	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3339
Ga0099674_110710	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	3070
Ga0099674_116321	All Organisms → Viruses	1965
Ga0099674_119963	Not Available	1581
Ga0099674_128453	Not Available	1051

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0099674_100078	Ga0099674_10007891	F103430	MKLITIKAFIGSDNQTKQLNIDTIVSIVNTNHEAFTLQYPVIGYWRGEAEETAVLYLSDERQKVMSTLNELKEVLNQEAIAYQIENDLQLI*
Ga0099674_100251	Ga0099674_10025126	F040685	MKKLLFKLFFALAFTSISLHGQEKIQQVEVHIFGGMALYSSHYTINFLYKEFEAKQVMGEPAELPKKILQLNPPDKWRVFTKKINLDKFKKLRDGPSEQAVDGQDEVIIIKTDKKTYRKMNAYGNDHDREVWYDLLQIIAKEFGKKGIYE*
Ga0099674_100251	Ga0099674_10025127	F051212	MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKNVYLVITKDSIIYRLTEGVTDKKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTDIQANKTWDYITKQIIDIKYSQLYNHLNLEK*
Ga0099674_100251	Ga0099674_10025129	F047127	MKKTFAFILLSIISLAKAQLTDIRYIPIISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDRMVGDRDIREILEKYNSK*
Ga0099674_100251	Ga0099674_10025139	F101359	MKKFLSKRSILVSALALVLGFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSTVNGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTNFTSYTGQGITDSYKETVK*
Ga0099674_100326	Ga0099674_10032627	F059076	MTNKILLLGLLLGGVSINAQVINETKAAGKTGQKVGINTNIPTRTLTIKNSTPNNGKPLLRLVDAPIYSKNVGSAMDADLGGNTATSTNYTDYRPLVVDKVGDVYQGLPINNMNILTLTIDNVNGDYIRKFDTGIDYKKYAVTIMNAIFKMPDAGAGKIVMLRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQLTNNWEIYADYPNIGSYEFSLGSTSAGNVVNGTWVITLLVGRREAVNFTELNFNQGGSAEGIGNSNTTYATQLQNFLQKLE*
Ga0099674_100435	Ga0099674_10043513	F055792	MEIVSQALDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVPRALERDLAIDCTLEEVGPVLIDKGDDGTEAGTTWGRYTLKTLQKEGYILFEGSMLPCEARRVDSRSSIKSLDLEPRIIGKTMKPIALPHVARLDEGIPLQRIGSLRDLLVTPDVSQADDLQTSREEGTDLLQLMGIIARKYQLFHTFVIISSASLRA*
Ga0099674_100756	Ga0099674_10075620	F054111	MNKSLESITHKEFLKLMERLKNLQEFTFLEYIMAPEADIFYFNFMEKESLSTADRDLFLNILDKEILFLI*
Ga0099674_100756	Ga0099674_10075622	F054111	MNKPLDNITHETFLKLMKHLKNLQEFTFLEYIIAPEADIFYFNFMEKIVKIKWDLDYGLSLETKSLSTSDKDLFLNILHKEILSLENQ*
Ga0099674_101067	Ga0099674_1010674	F043990	MIKKLGIIFTFGVIILGIVVYAGHKIEKSWIEGEFGVNMSNMNIDEKYREEEWAPNGDGERVIILTYDQLDSSFTKLNKLPIKEDLPPNGIPKQFLNNTNGYYKYIGDENDDWNFGILIVDTTRKEICIYYQIL*
Ga0099674_101079	Ga0099674_10107926	F061925	MSWEYSLNLDSEESVSLVVMDLKNCELFSSSTTDYIDWKNPESMDGIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKHDYHLTDCDTDEEVTLEHIFRSVI*
Ga0099674_101099	Ga0099674_10109910	F051213	MLRYSCLAKQIHPMNLYKILGALILALSFVFTSCDWVSNEPTIEGDRFKYFDSSAQRKSFRVVNASGKRYNHKVDWHIIGITQLDSDTFFTKKVDTLSNGNLKISYDWVSFTVKERKSVIEVEVQKNETGQARSVFFATSNSRYQAHLPNMIITQRAK*
Ga0099674_101227	Ga0099674_10122722	F089056	MNVFCKIILPLLCIISCSKRKEADNTKTLEKNHTFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSISLKEYLGTPNRRFKDKEEIVFMYYINSCCDNGQLLEECDISFIAITFTNKNEILFRKGIQ*
Ga0099674_101895	Ga0099674_10189510	F084362	MSLMNCTFTVRWSDDKNKPHAKTYATESDAKRAKKWLLEHGVRSVDIAIKINNKPAGSLEDDKPSETEAEQKGFWWEK*
Ga0099674_101895	Ga0099674_10189518	F076191	MKIIAENPAEEALLRRIKALSAELVNQDNRSTDMPMWTILDNNKAGKDYGAVMYFTGKAAKQHIDENDHHYENPMIYIRSAHDNRELKDVIHLLILAGGNEIPSNHYGVLSDA*
Ga0099674_102477	Ga0099674_10247710	F057446	MNSISFGKTTITSYPEYFEIADNKKTNKLLYLSASFVFIAIYLFDLYQNDFDFGKVAYFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWASIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR*
Ga0099674_102594	Ga0099674_1025947	F090516	MKSNLSLKLFLAFERYFIENDEVISLDKSLEFTDVIVGIGFLPHDMSENTDFKKKILKKYGFSSATALAEDFRKRVLNIDEPIPENFEKDGIGYVYTVISGYDTFYNRMYMFGIHCFNGDFNVTYFDLDNDAETGDYYEEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLVTDIYFHLEDKLDVKIDIKPIPEEEKVVPTQEHLAKFLAFCGVEQDVIDENKERLLKALEEYTPDEYEGISEAMAEMMEYSHKIQRAEPVIEIIREYGVCRSSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLFPYMRKQLYPYHLWLCHLDEGADAYLFLLFPEEDMPEIMKLARILDLPLKAYFK*
Ga0099674_102752	Ga0099674_1027528	F063778	MPETISEEAKQELLRHLQDALGLVKNADTSAQDVAAITHSAADGHQLTEVMLQQMTAIEAYLKNCQVSINDAIGNIEAIPLDPPPED*
Ga0099674_103071	Ga0099674_10307110	F058221	MKNKMGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKTLGVLTNGVTEKYLGGIMDSGLAQNAYSLADKFLLPSLEAGSAKLLTNVLLKKVRPSMKKTLIGLGVAVLTPIIIMQIKKRLDNFQQRETTKSLSKLI*
Ga0099674_103071	Ga0099674_10307114	F061927	MKKSIFILSAMFILGACSSDSAQKVTEKIKNAYSDGLRKTFIKEGIKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNSPKDLDNRIEKAISSCIGE*
Ga0099674_103134	Ga0099674_1031344	F064819	MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTEIMISEEDLDIERSDLEDLIRNLKDLCEYKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDENYMNSINFSFQTDLNGIATFSKEILQEIKKYK*
Ga0099674_105526	Ga0099674_1055267	F030786	MKRIRIHKVVFQMLVVMVVTSSLQMLLKNGSATKGGNAMGAKKISLADITEGDDSTEGVLKVKYFDDDGADKIFENNNNKILNTINSQHISFNSQSAEYSKPQLFLLYRSLKVDC*
Ga0099674_108542	Ga0099674_1085424	F085821	MSNIFEQLAPLAETKKQQTTVAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYVVAQGYPTAENEKQFLNWVFMEPVYYLKYFISDASTQKKLHHDLLNLWYESSKRQLLEQDKGKHDETYINAWNEASVNKTLSIIRSGETIASGKEDVVELAESLNDEYELNISLLDEYCRALLYTAETTESQQELVAETQNHIALLKDLYKKVNKIK*
Ga0099674_108997	Ga0099674_1089975	F095630	MIYSSLCKTVENNGLLAHIYEHLLAQYVMKSLQGRGFFISSDIILTAKTYGDTCFIDAELYNPAAQKAYGEALQLFDDWDIPGDAALRVAGECGIEMNRVVAELKQDELLRSLNIVQLSAWHQQSDLTYRKADDKSSVNTLFRVPYVKYGRKSKNIFPEYVLEYSVDEKYIQSPVDQALAAVVMQVAALNFLVMIREKHTVYDRGDQWSEASKSVGYRMFLGLIKKDDNIVDQLKREFMEYVQFLSESSFCDNLQTALARCSHNYEQVLLGRDALNSILGGCVIGGKGWLEMADSARIQQMLAAIELDVYGI*
Ga0099674_109878	Ga0099674_1098785	F095630	MCYSPLYKISKDNGLLAHVYEHLLAQYILKYLQDKGFFILSDIILTAKTYGDTCYMDVELYNPAAPNVYNEALQAFDKHTIPEKAVRRAVSECGIEMNRAVLELKQDELMSNLSRMQSSDWRQQSEMTYRKSYDKSSVDTLFCVPYLKYGKKSKKLFPEYVLEYSIDEEYINSPIDQALAAIVMQTVALNFLVAVRENYTVYDRDDQWSEASLSVGYRMFLGLAKEDKQITSQLKHEFTTYIQYLLKSPFCSNLQKALLRCSRNLEQVLLGRSTLNNILGGCVIGGRGWLEMADDARIKQMIAAIQLDVYDI*
Ga0099674_110710	Ga0099674_1107104	F022002	PINRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYERCPTLSVRLYFYKGHLRSMSFTFDDLEIFEQIESRLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEYDGHVGFAYAYISYTDLELDRAYSAENENEI*
Ga0099674_116321	Ga0099674_1163212	F105377	MTRPEVRSEVRDFGELPLLTPEEAFERAWEEGGSAHPVFDRGYRVRGLNDWKAIETLLRQNDVSDITVASFGLRRFEEIFDVFAMLSERGWHLWQTAANVYVGGERKTVQAIRAHYRGD*
Ga0099674_119963	Ga0099674_1199632	F070224	MKRLLFLLLTLLHYTAWSQVYNAPDSIYVASGAVYIPPISGEPIYLLASPLRPVKPRGSKKRTRDWVKVDFSDENNIIIVNAGDPLVIENFFAYYAAEFPKMKEYELYYKGTGEEITKEDFDSIKFTRMPTALREIKKYKLPRTRRTLREVDRWQHPHLFVIEHDKKASRYYKYRIALVIYIDYHHPEAYTVH*
Ga0099674_128453	Ga0099674_1284532	F022002	MTNIYSPSSRSMSSRLALTLGLLLALLLSLPSYAQDGQSKEPINRTISGFTLGVTTPAEARAIIQRQGGKIILEVGVHAGSKDASYIVSGLNYARRPTQTVAMFFYKGHLHSIDFIFDGWDVLEQIESELEDKYGMMIESEGMFKKKSIADAFTSLEVVRTFDYEGHSMSKNAYIAYTDLELERARSAEKESEI*