3300006299: Human stool microbial communities from NIH, USA - visit 1, subject 550534656

Overview

Basic Information

• IMG/M Taxon OID: 3300006299
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052832 | Ga0099524
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 550534656
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 74280129
• Sequencing Scaffolds: 5
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F052660	Metagenome	142	N
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F080163	Metagenome	115	N
F087334	Metagenome	110	N
F087335	Metagenome	110	N
F089054	Metagenome	109	N
F094005	Metagenome / Metatranscriptome	106	N
F101357	Metagenome / Metatranscriptome	102	N
F105375	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0099524_100133	Not Available	84365
Ga0099524_100136	Not Available	83669
Ga0099524_100843	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	16700
Ga0099524_101640	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	6460
Ga0099524_105180	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1341

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0099524_100133	Ga0099524_10013342	F089054	MLTKGKFLVSFEVPGHTKKYTEGFTEEMVIPYRTEELNPYLRYPNQEINNNHLHSEHIRLQIREILQIPLSDITIIDIISLP*
Ga0099524_100136	Ga0099524_10013630	F064817	MNIKNLFNRFRKSKESELSYSLNLIYLEDTRVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKALVPVHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLSHSFTYILDQTEEEGRRICIQNIIERNINQENQDENETI*
Ga0099524_100136	Ga0099524_10013632	F105375	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVNFAMNFTDGEANIKSINRISSNIMQITFTV*
Ga0099524_100136	Ga0099524_10013635	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDNFYNYSNASNIHYEGGKFPSMLTIQLFNLEF*
Ga0099524_100136	Ga0099524_10013644	F080163	MKTIKFLQESFETKERFQQEISFKYSYNRDTVESIDFRINQRNIRYFYEAMQNFENSLVNEFKEKKNNFCDAKQFLESINDFDKILFVIITYMKTYFDFCKDYSKISLYVHLVQFDFTTSVLIQGFYNYTHRDLSFSTKLESQILDSEIELLQEKLDLIREEIYELIGIEKQGHEDNYVFNLNIESDNQIGFFLQETEL*
Ga0099524_100136	Ga0099524_10013646	F060985	MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKVIDFLRHAETNLGMCRIFDNQNHEFWHSVIKPWFKPERFGITHLWFPERFSFIGYGEYHIIRGNRWLKTPIDKIDRENRIFGYWFPCYKKYIPHRLRVLRLALKDLERIKEEYGKD*
Ga0099524_100136	Ga0099524_10013647	F032312	MPKIKDYDEDLSAPKLLRERARDSKGRFIKKDLPSYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVVWFIIFLYGLVS*
Ga0099524_100136	Ga0099524_10013648	F094005	MKKEVIKLKEGNSVIYQDKTLMEKANVVSIDKKKGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNAFVAYHQSKKSLEAIKKWLDDNGKHKDDETLEKVITLDKKLKKLIEKLNE*
Ga0099524_100843	Ga0099524_10084310	F052660	MCILRVLPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSCGRFLHGGILMGIALPIPSHRAKSHDFACWWPAAAGHSRSADALPGKSNS*
Ga0099524_101640	Ga0099524_1016408	F087335	MIELYFNDANLMPENREEEQYAEAALNSILAGKTADVEMCIQPCFYDAPLHKGLLYNLDDGTTLRIRPILNEVGEPELLIRCVTEESVETVYQGVANYD*
Ga0099524_105180	Ga0099524_1051803	F087334	MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRATALFEYREKHQ*