3300006295: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160603188

Overview

Basic Information

• IMG/M Taxon OID: 3300006295
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052478 | Ga0099657
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160603188
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 67450851
• Sequencing Scaffolds: 22
• Novel Protein Genes: 30
• Associated Families: 26

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Riemerella	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium JJC	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F030786	Metagenome	184	N
F036281	Metagenome	170	N
F040685	Metagenome	161	N
F041827	Metagenome	159	Y
F042387	Metagenome	158	N
F043991	Metagenome	155	N
F047127	Metagenome	150	N
F051212	Metagenome	144	N
F051214	Metagenome	144	N
F054111	Metagenome	140	N
F057446	Metagenome	136	N
F059076	Metagenome	134	N
F061925	Metagenome	131	N
F061927	Metagenome	131	N
F064818	Metagenome	128	N
F064819	Metagenome	128	N
F067847	Metagenome	125	N
F071327	Metagenome	122	N
F071329	Metagenome	122	N
F074985	Metagenome	119	N
F080165	Metagenome	115	N
F090516	Metagenome	108	N
F097525	Metagenome	104	N
F101359	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0099657_100028	All Organisms → cellular organisms → Bacteria	43110
Ga0099657_100035	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	37957
Ga0099657_100047	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	32257
Ga0099657_100099	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	23007
Ga0099657_100357	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	11735
Ga0099657_100366	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	11610
Ga0099657_100389	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Riemerella	11255
Ga0099657_100873	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	7646
Ga0099657_101197	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	6364
Ga0099657_101883	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	4809
Ga0099657_102719	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	3782
Ga0099657_102832	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	3678
Ga0099657_103541	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	3173
Ga0099657_104142	All Organisms → cellular organisms → Bacteria	2846
Ga0099657_104838	All Organisms → cellular organisms → Bacteria	2550
Ga0099657_104859	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2540
Ga0099657_107126	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1881
Ga0099657_107165	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1871
Ga0099657_112848	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1172
Ga0099657_125556	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	634
Ga0099657_128888	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium JJC	564
Ga0099657_129015	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	562

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0099657_100028	Ga0099657_10002817	F071329	MLPVAKIILSGLTSIGAGMIASKLTKPLVSNSSGIAKILLWFGSVGTGLAASAIVAREVEKQFDETVAAVKEARDHIEIED*
Ga0099657_100028	Ga0099657_10002818	F018385	MAENKWDSYLEGSIEKDRDPALDDEIIYGVNVKHFNLTVYHPNGRVKKYWNTRILKDYLGYCRIACPRDDKILSFNWFNWTAYMFTQSGMNELVFMPHSRRGIVSQLSQGN*
Ga0099657_100035	Ga0099657_10003510	F071329	MLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGVAASAIVAREVEKQFDETVKAVKEARDHIEIED*
Ga0099657_100035	Ga0099657_10003511	F051214	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDLIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWIA*
Ga0099657_100035	Ga0099657_10003512	F043991	VSKKNPSVIDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNVKPSWVGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA*
Ga0099657_100035	Ga0099657_10003515	F027205	VASRLIVSADDILKAVKESEEFEKKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSAK*
Ga0099657_100035	Ga0099657_10003516	F036281	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRVKNGDLMSNGSVLFLAEERKIYNAKEYYDYWSAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDAQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF*
Ga0099657_100035	Ga0099657_10003517	F074985	MELTDGGWYKTPRIIKGTDFLAHIHDTYTSGNAMYVEFKASEGEVRILEYRRLYDVDTENAVLFTINKRPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQALRADAILDVTVSGVPMRLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID*
Ga0099657_100035	Ga0099657_1000358	F018385	MAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNTKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLYHEEVK*
Ga0099657_100047	Ga0099657_10004736	F061927	MKNSIFILSVMFILGACSSDSAQKATEKIKNAYSDGLRKTFIEEGVKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNPPKDLDERVDKAIDSCIGE*
Ga0099657_100099	Ga0099657_10009913	F071327	MEELFNSVYSTHKGISFSTVVVFGAFIFLLLQAHLSYKGAVSDVLRKTNFFSMMLLYVQGILGVFLGIYSPEFSEVSGFSSLLKHFEYGISILLCAGMMTYVYTYIKNNKQLSLKIVVIALVAALLFEYAYPWRLIFG*
Ga0099657_100357	Ga0099657_10035710	F040685	MKKLLFKLFFALAFASISLYGQEKIQQVEVHIFGGMALYSSQYTLNSLKKEFSKKPLMGQKEELPKEISLPNTPKNWEAFTKKINLNKFKELREGPSQQAFDGQDEVIIIKTNKKTYRKMNASGNDHDRETWYDLLQIIAKEFGKKSIYE*
Ga0099657_100357	Ga0099657_10035711	F051212	MKKFFFIFVLYWLHSCNGTEKVNADTIKTSIFEKQNTEKIERIIYSQTGGDTGGKNVYLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTNIQNNKTWDYITKQIIDIKFSQLYNHLNLEK*
Ga0099657_100366	Ga0099657_1003668	F057446	MNSISFGKTTITSYPEYFEIADNKKTNKLLYLSASFVFIAIYLFDLYQNDFDFAKVSHFKTISAVLWLVIFALQFWMINTENKIEKSKIKEVVVRKNRWASIVIHYGGKKRKIDGFSQDEAEQIIKFLMNNR*
Ga0099657_100389	Ga0099657_1003891	F047127	MKKTFVFILLSIISLAKAQQTEIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDRMVGDTDIREILEKYNSK*
Ga0099657_100873	Ga0099657_1008737	F097525	MQQKKIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFFELLGLLEWFEQISANKEKSTEIDFIEPELAFEYQNKKLIVLLCYDIAPVSYGEEPYQLTFSLDDKTLAMIIKELGEAVASFERE*
Ga0099657_101197	Ga0099657_1011976	F061925	MSWEYSINLDSEEAVSSVVTDLKICELFSSSTTDYIDWKNPKSIDDIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKQNYHLTDCDTDEEVTLEHIFCSVI*
Ga0099657_101883	Ga0099657_1018831	F059076	MTNRILLLGLLLGGASINAQNINETNAAGKTKQKVGINTTIPTRTLTIKNSTADKGKPVLRLVDAPIYSKNVGSAMDADLGGNTATSTNYLDYRPLMVDAVGDVYKGLPINNMSILTLTIDKVNGDYIRKFDTGIDYNKYAVAIMSYTFKMPAPASGGIVMLRGGSNTPSVAHGGNKYGVTTAPATVLLTQNGSNWGIYADYPNIGSYEFTSGSTDIGQLVDGTWVITLLVGKRDAVNFTELNFNQGGSAEGIGNSNTTYATQLQNFLKKLE*
Ga0099657_102719	Ga0099657_1027193	F054111	MNKSLESITHEEFLKLMECLKNLQEFTFLEYIIAPEADIFYFNFMEKTVKIKWDLDYGLFLETESLSTSDRDLFLNILDKEILFLI*
Ga0099657_102832	Ga0099657_1028323	F042387	FFRFHFIMIKLHSIKKVYFMKRIILFFMAGLFLISCSRENDKMTDETLANSAKMQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKTNYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYSYNSSEVLVNENVKYHSESYAYNLKDENFTHTYVLNGENITKIHHEISKNVPSGHFYLNPNNMVVIDEEVTYDAKNSPYKKIKGFSALATEFCGLDKDENTIADYLNYRWVSHNPTLIKKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNIDNQTITTMVYEYNK*
Ga0099657_103541	Ga0099657_1035411	F101359	FLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQYQGNNSINGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTNFTSYTGQGITDSYKETVK*
Ga0099657_104142	Ga0099657_1041424	F041827	MKHFLSALALGCLLLSCNRDIENNENNETPAPPKEERLVLASLYEFGSNVRFQYKNGNEINRMAMDGPHGEASMDFEYDTYGRIVKERRFHHRSDYGETIITYQYDNQSKLLSSHAISTQYYPDTGYTPRCSVEKKHTYTYQGNKVTVKIEMGTDTCSAIPETGKEKTITLFVENGKVVKSLDENNQIIETIEYLNTKNTLRNMKGFPALVVEFYIRPFTYELPFYNGIEHIEDLRFIDNIKTRDFHNGSYWEYRYSYDKGKSHDNDYLEIEEVNIYEKSHNDPTHDNYLSSASPARFYTKEK*
Ga0099657_104838	Ga0099657_1048384	F030786	MKRTRIHKVVFQMLVVMIVTSSLQLLLKNGSATKGGNAMGAKKISLTDIVDGDDSETGVLKVKYFDDGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC*
Ga0099657_104859	Ga0099657_1048593	F090516	MKSNLSTELFFAFERYFIENDEVISLDKSSEFTDVIVGIGFLPQDMSENTDFKKKTLEKYGFSSSTALADDFRKRVLNIDEPIPENFEKDGIGYVYTVISGYDVSYNRMYMFGIHCFNGDFNVTYYDLENDAETSDYYKEYELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDRLDVKIDIKPIPEEEKVVPTQEHLAKFLAFCGVEQEVIDENKERLLKALEEYTPDEYEGVSEAMVEMMEYSHKIQRAEPVIEIIREYGVCRSSDWKFYAEELEEYILDLVDFSDWKWEYPADTYSADLFPYMRKQLYPYHLWLCHLDEGADAYLFLLFSEKDMPEIMKLAENTRLTAKSVF*
Ga0099657_107126	Ga0099657_1071262	F064818	MNKDEFLKELIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNKEVGDFFEQEMDNTFLKMLEDESKEFRNLFFAQNSFQLSHYYYGFPIMTNDDTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPPCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK*
Ga0099657_107165	Ga0099657_1071652	F041827	VLLSCNRDLENNETPAPAPQKEKLVLLKQLSEGSTVTFQYKNRNEIESVNIDGVGNSDIDYEYDTYGRIVKERRFHRRYDYGETNITYQYDGQGRLASSHAISTEFYPGTGLTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIKQTIEYYNTKNALRNIKGFPALVVEFYIRPLSYELPYYNHGIERIEDLRYIDNIKTRDFHDGDYWEYRYSYDKENTYNGDYPNGVGVHARVHNDPTYDEYLYEISADRSYIKEE*
Ga0099657_112848	Ga0099657_1128482	F064819	MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDIERSYLEELTRNLKDLCECKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDESYMNSINFSFQTDLNGIATFSKEISQELKKI*
Ga0099657_125556	Ga0099657_1255562	F067847	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPALVREFYQGILPEKIMKQVQQD
Ga0099657_128888	Ga0099657_1288881	F080165	GLTACNNKTKTISTLDLEKVVINYKELPAPVKKKVFPPNNGLITFGEENREEYESFQETNNPKKYEYYTKQDPQLAWVHAPYIRNKKTKQEYSIDKDGPMGSRYIIYGDSLYISNHYNIYEEDSLRYTFTRYILR*
Ga0099657_129015	Ga0099657_1290152	F067847	MFSHIIRIKGIFDDEPTTKKLYFHLSRREMFDFIKRYDNVTSFEQWLQAAMDNEDLYTMMKFFDDLIGSAYGERQGERFVKNEQIKESFLNSPEYEELFDQLMDNPALVREFYQGILPEKIMKQVQQDP