3300006294: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765135172

Overview

Basic Information

• IMG/M Taxon OID: 3300006294
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052474 | Ga0099625
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765135172
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 40199665
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
All Organisms → Viruses	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F043991	Metagenome	155	N
F074985	Metagenome	119	N
F097527	Metagenome	104	N
F101358	Metagenome	102	Y
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0099625_100069	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	45727
Ga0099625_100344	All Organisms → Viruses	10496
Ga0099625_100430	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	9155
Ga0099625_100725	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	6483
Ga0099625_102612	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2437
Ga0099625_102785	All Organisms → Viruses	2310
Ga0099625_104829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1403

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0099625_100069	Ga0099625_10006914	F101358	LTQPITTDGTPKERAIHPDTHIIPKRQDAPHHQWNVLRSSGQLDEGWIDREIIDEDGTVLVRMTKPVNRSNIHRLEKCVPLAVLQEQNIDFTNAYLQRAYGVMVKDGRLQPATDTTHATTSSQEQQTEILPAQGGDTYEHLSGDSARQLVGSVAAKASDTEVDNSLLVERAREYAEQR*
Ga0099625_100344	Ga0099625_1003443	F105377	MRDFDKLPLLTPEEAFERAMEMGWNRLLFDHGYRVRGLNDWKGIETLLRQYDVDDAVIASFGLKRFEEIFDVFAMLSDRGWSLWQTSANVYVDGELRTVPAIRAHYCGD*
Ga0099625_100430	Ga0099625_10043012	F074985	MELTDGGWYKTPRIIKGEDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRQLYDVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFNLEQFDQLWLDQTFQKLHPVIVNHDGKFWYVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWFLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSKTGEQKYLLDHIKAMHID*
Ga0099625_100725	Ga0099625_1007252	F018385	MAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTTYMFTHDGLNELVFMPGSSRKTISRLYYEEVK*
Ga0099625_100725	Ga0099625_1007256	F043991	MSRKNTSVIDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNVKPSWVGKYSHQMHFDLPDDTEVSFYKGLNIVCADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA*
Ga0099625_102612	Ga0099625_1026123	F101358	MTEKYSASLPPRQENLLTQPITTDGAPEKRTTHPDTHSIPKRQDVPRHRWNVLRSSGQLDEGWIDREIIDKDGTVLVRMTKPVHRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGVMVKDGRLQPVADTTHATTSSQEQQTEILPAQGADTHEHLDGDSARRLVGSVAAKASDGEVDNSLLVRRALKR*
Ga0099625_102785	Ga0099625_1027852	F105377	VRNFDKLPLLTPEEAFDRAREEGGSAHPVFDRGYRVRGLDSWKTIETLLCQYDVQDITVASFGLKRFEEILDAIAMLHERGWHLWQTSANVYVDGEKRTVQAIRARYRVI*
Ga0099625_104829	Ga0099625_1048291	F097527	MIYFKMEKIGNSTYNKEKKTRSENLVFITIPAAGVEPARPCGHWILSPA