3300006287: Human buccal mucosa microbial communities from NIH, USA - visit 2 of subject 764325968

Overview

Basic Information

• IMG/M Taxon OID: 3300006287
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052477 | Ga0099627
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 2 of subject 764325968
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 9441287
• Sequencing Scaffolds: 4
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphovirus contig89	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F049707	Metagenome	146	N
F051214	Metagenome	144	N
F071329	Metagenome	122	N
F074985	Metagenome	119	N
F081456	Metagenome	114	N
F095632	Metagenome	105	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0099627_100001	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	22776
Ga0099627_100006	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	10644
Ga0099627_100758	All Organisms → Viruses → Predicted Viral	1038
Ga0099627_101958	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphovirus contig89	671

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0099627_100001	Ga0099627_1000011	F036281	MITLIKVDEGPVDIYELRMQYLAKLKKTDGVMLPKFIYRNRELFITEFKPTCDDQWIMYLTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPTPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRVSDDLKSKFTRHAITNEKGHQSYDWVLKNVEWAADTIRYF
Ga0099627_100001	Ga0099627_1000012	F027205	VASRLIVSADDIMRAVKDSEEFERKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSTK*
Ga0099627_100001	Ga0099627_10000120	F081456	MFEEPPIYYILISLIFLIVFGAVAFATWLVWLTPISFMAKLVMTAIGFLLCAITVILYTISAE*
Ga0099627_100001	Ga0099627_1000015	F043991	MSKKNPSVIDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNVKPSWIGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAHGDPSNVHPDFRA*
Ga0099627_100001	Ga0099627_1000016	F051214	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPVYIYNNREYQIACEFLRQIMHDKIDLKDEWLV*
Ga0099627_100001	Ga0099627_1000017	F071329	MLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGVAASAIVAREVELQFDATVKAVQEARDHVEIED*
Ga0099627_100001	Ga0099627_1000019	F018385	MAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSPEGRVSKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLYYEEVK*
Ga0099627_100006	Ga0099627_10000613	F074985	VELTDGGWYKTPRIIKGTDFLAHIHDTYASGNAIYVEFKASEGEVRILEYQRLYEVDTESAVLFTINTYPPESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFSVSDFDELYIDQTFRKMTPVAFTHNNQYWTVMGLELASAETGWFIYLKRRDSDFMTRLNFNRDQKFLYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDPTTGEQKYLLDHIKAMHID*
Ga0099627_100758	Ga0099627_1007581	F049707	VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDETGWTIWYFRLVDGGVMTFSAREWEQKDDVNHLTTIWMKPSLYDIERKEN*
Ga0099627_101958	Ga0099627_1019581	F095632	MSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGIGSSVLGTYVGDKAGRLYAETLADTIDSLQTPQTN*