3300006286: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 765135172

Overview

Basic Information

• IMG/M Taxon OID: 3300006286
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052467 | Ga0099616
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 765135172
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 23761932
• Sequencing Scaffolds: 2
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F051214	Metagenome	144	N
F067847	Metagenome	125	N
F074985	Metagenome	119	N
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0099616_100016	All Organisms → cellular organisms → Bacteria	40572
Ga0099616_100778	All Organisms → Viruses → Predicted Viral	4045

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0099616_100016	Ga0099616_10001615	F074985	MELTDGGWYKTPRIIKGSDFLAHIHDTYASGNAMYVEFKASEGEVRILEYKRLYDVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFNLEQFDQLWLDQTFQKLHPVIVNHDGKFWYVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWFLDDPTQEIKDLEEIKQALRADAILDVTVSGVPMRLIRVQEIAKGVLFFVFQDDEKNKRYYYNRPAIKLRIVTDSKTGEQKYLLDHIKAMHID*
Ga0099616_100016	Ga0099616_10001616	F036281	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWAAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDAQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF*
Ga0099616_100016	Ga0099616_10001620	F043991	MSKKNPSVIDYFDLNGDLNEEAYEFEDVKLDEYIDKRSNVKPSWVGKYSHQMHFDLPDDTEVSFYKGLNIVCADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA*
Ga0099616_100016	Ga0099616_10001621	F051214	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQIMHDKIDLKDEWLV*
Ga0099616_100016	Ga0099616_10001623	F018385	MAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLWCEEVK*
Ga0099616_100016	Ga0099616_10001630	F067847	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVQQDPKYKELDDKLKETELNNL*
Ga0099616_100778	Ga0099616_1007783	F105377	VRDFDSLPLLTPEEAFERAREMGWDLPLFDHGYRVRGLEAWKAIETLLRQYDVEDLVIASFGLKGIEEIFDAFAMLHERGWRLWQTTAKVYVGGELRTVQAIRARYRDV*