3300006246: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 159005010

Overview

Basic Information

• IMG/M Taxon OID: 3300006246
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052806 | Ga0099370
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 159005010
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 20668113
• Sequencing Scaffolds: 8
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → Predicted Viral	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F051214	Metagenome	144	N
F067847	Metagenome	125	N
F071329	Metagenome	122	N
F081456	Metagenome	114	N
F095632	Metagenome	105	N
F101360	Metagenome	102	N
F103434	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0099370_100030	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	23499
Ga0099370_100037	All Organisms → cellular organisms → Bacteria	17511
Ga0099370_100156	All Organisms → Viruses → Predicted Viral	3108
Ga0099370_100325	All Organisms → Viruses → Predicted Viral	2069
Ga0099370_100462	All Organisms → cellular organisms → Bacteria	1788
Ga0099370_100696	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1487
Ga0099370_100830	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1375
Ga0099370_101301	All Organisms → Viruses → Predicted Viral	1133

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0099370_100030	Ga0099370_10003017	F101360	VSKENALRKAAIAAHVAKVASQEKKKALKELEKYMAPGDTSKPQIDGLQVGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVATAALAGFIKQTGEVPDGVEVVQGDPRISVRISAAQEEAIRELISTGDIGLLEIEGGDA*
Ga0099370_100037	Ga0099370_1000377	F103434	VVGFRPRRGRYLENGPHVVEVTLAVIKEGRTGRRFERGETFVIDKVLVQPSAGNALKATENRVIRGDLTDETTLKIMGTGRKWPGGPHSWVKIIKGPDALVGKTFQQAGEPLTYDASPMTHHFSVRCDTLGTESR*
Ga0099370_100156	Ga0099370_1001562	F018385	MVEYENQWESYKELSIENDRDPVLDDPIIYGVNVKHFTLTVYSPEGRVSKYWNARILQDQLGRCRIACPRDGKILCFAWFEWTSYMFSHDGLNELVFIPRTNSRLPSTLWNTKEVK*
Ga0099370_100325	Ga0099370_1003254	F067847	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVQQDPKYKELDSKLKETELKNL*
Ga0099370_100462	Ga0099370_1004622	F095632	MSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGVGSSVLGTYVGDKAGRQYAETLAETIDSLQTPQTN*
Ga0099370_100696	Ga0099370_1006962	F081456	MFEEPPIYYILISLIFLIVFGAISFATWMVWLTAISFFAKLVVTAIGFLLAAMTVILYTISAE*
Ga0099370_100830	Ga0099370_1008301	F071329	RKETLMLPVAKIIISGLSSIGAGMIASKLTKPLVSNANGIAKILLWFGSVGTGVAASAIVAREVELQFDATVKAVQEARDHVEIED*
Ga0099370_100830	Ga0099370_1008302	F051214	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRAFLHDEDITIKPIYIYNNREYQIACEFLRQIMHDKIDLKDEWIA*
Ga0099370_100830	Ga0099370_1008303	F043991	MSKKNPSVIDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNVKPSWIGKYSHQMYFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA*
Ga0099370_101301	Ga0099370_1013012	F036281	MITLIKLDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPTPFFYESRQYHVKSFMRVPGSTDLWITAEREKDRWYTFRMSDAQKSKFTRHTMTNEKGHQTYDWVLENVEWAADTIRYF*