3300006240: Marine sediment microbial communities, about 1 km from oil contamination, maybe ambient, Gulf of Mexico ? BC120

Overview

Basic Information

• IMG/M Taxon OID: 3300006240
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116840 | Gp0121720 | Ga0097669
• Sample Name: Marine sediment microbial communities, about 1 km from oil contamination, maybe ambient, Gulf of Mexico ? BC120
• Sequencing Status: Permanent Draft
• Sequencing Center: Yale Center for Genome Analysis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 31909919
• Sequencing Scaffolds: 5
• Novel Protein Genes: 7
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Sediment Microbial Communities From Different Distances From Oil Contamination, Gulf Of Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Sediment Microbial Communities From Different Distances From Oil Contamination, Gulf Of Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine benthic biome → marine benthic feature → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.3
  • Long. (^o): -88.2
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000203	Metagenome / Metatranscriptome	1619	Y
F030135	Metagenome / Metatranscriptome	186	Y
F082867	Metagenome / Metatranscriptome	113	Y
F105419	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0097669_113633	Not Available	946
Ga0097669_117251	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	702
Ga0097669_119133	Not Available	562
Ga0097669_128401	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	654
Ga0097669_128904	Not Available	729

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0097669_113633	Ga0097669_1136331	F082867	SSLSIPKERKMPKKKKNSRSRRVHHINDINHNDTNITVQYRVVKPLTFTSNTLVLSVNPALTDLSNTLATIYRQYRVTELSFTFQASSDAGAYALAMQYVPQIGGTPSTLPTLLSEFEGPAVGYYETGRGREYTFRVPSDVLNAMGLNYYSTRTAVTPIQDPDILTQGLMVFLTSSPNIPVVAYMHVKYEFQTLEDPSFLASLFDDKKQDNDMLVVPRPSLNSVGDAKGATWDENARGRIRGQSLGNNHFSSVTQP*
Ga0097669_114627	Ga0097669_1146271	F000203	LFPMCWHLALGLFRKPAVSFPTPFSTASGVYGLVAGPDSPFLAGLFE*
Ga0097669_114629	Ga0097669_1146291	F000203	LFPMRWHLALGLFRKPAVSFPTPFSTASGVYGLVAGPDSPFLAGLFE*
Ga0097669_117251	Ga0097669_1172512	F105419	MKKFIILSAFVAAAVTFTGLTNGCISNTKYGCDVTETLAPGASEGEVVMKHGAPDNIVYLGTPYFNPTTGERGEVDKYLYEYRIGGGTTLLGQLFADDRFHNICYLIEGGRVMGGGYVGEGSGSIIMGNAGISTPLGTLFEFGGFL
Ga0097669_119133	Ga0097669_1191331	F030135	REELATLSSFTDIWHSTFVGRQFPDAILPGKEAIDLVAGPLN*
Ga0097669_128401	Ga0097669_1284011	F105419	QVGAAVAFQVKTLAILANREAKKEKKDMKKFFVLSAFLAAAVAFTGLSNGCISNTKYGCDVTETLAPGASEGEVIMKHGAPDNIVYLGSAYFNPQTGERGEVDKYLYEYRIGGGTTLLGMLFADDRFHNIAYLIEGGRVMGGGYVGEGSGSIIMGNDGITLPVIGKVMQFGGFLHPKARAGYGGDGTPSGGADVPENKG*
Ga0097669_128904	Ga0097669_1289041	F030135	EGLKDREELATLSSITDIGHSTFAGRQFPDAILPGREAVDLVAGPLN*