3300006235: Marine sediment microbial communities, 33.9 km from oil contamination, ambient, Gulf of Mexico ? BC463

Overview

Basic Information

• IMG/M Taxon OID: 3300006235
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116840 | Gp0121740 | Ga0082395
• Sample Name: Marine sediment microbial communities, 33.9 km from oil contamination, ambient, Gulf of Mexico ? BC463
• Sequencing Status: Permanent Draft
• Sequencing Center: Yale Center for Genome Analysis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 53400653
• Sequencing Scaffolds: 11
• Novel Protein Genes: 12
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	9
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Sediment Microbial Communities From Different Distances From Oil Contamination, Gulf Of Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Sediment Microbial Communities From Different Distances From Oil Contamination, Gulf Of Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine benthic biome → marine benthic feature → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.3
  • Long. (^o): -88.2
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000344	Metagenome / Metatranscriptome	1257	Y
F009040	Metagenome / Metatranscriptome	324	Y
F021791	Metagenome / Metatranscriptome	217	Y
F041277	Metagenome / Metatranscriptome	160	Y
F047147	Metagenome / Metatranscriptome	150	Y
F056191	Metagenome / Metatranscriptome	138	Y
F082867	Metagenome / Metatranscriptome	113	Y
F105419	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0082395_1011114	Not Available	696
Ga0082395_1011752	Not Available	1052
Ga0082395_1020776	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	828
Ga0082395_1021003	Not Available	715
Ga0082395_1023932	Not Available	705
Ga0082395_1024051	Not Available	630
Ga0082395_1026715	Not Available	1064
Ga0082395_1031190	Not Available	668
Ga0082395_1031965	All Organisms → cellular organisms → Bacteria → Proteobacteria	545
Ga0082395_1034737	Not Available	813
Ga0082395_1034739	Not Available	828

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0082395_1011114	Ga0082395_10111141	F047147	IVAVTEGLVREEQLLHDMWLLGAMTMEITQILTRARKTWT*
Ga0082395_1011752	Ga0082395_10117521	F047147	EGLVREEQLLHDMWLLGAVTVEITQILTRARNQPD*
Ga0082395_1014366	Ga0082395_10143661	F056191	VCEARFRHALTAEMSEIFPSGGSMHASVKLEGIDGR
Ga0082395_1020776	Ga0082395_10207761	F105419	MKKFFALSVFMIAAVTFTGLTNGCISNTKYGTDVTETLAPGASEGEVVMKHGAPDNIVYLGSPYFNPTTGERGEVDKYLYEYRIGGGTTLLGQLFADDRFHNIAYLIEGGRVMGGGYVNEGSGSIILGNDMGMIVTPLGAIDLRFGGFLHPKARAGYGGDGNP
Ga0082395_1021003	Ga0082395_10210031	F047147	VTEGLVREEQLLHDLCLLGAMTVEITQILTRVRTKYI*
Ga0082395_1023932	Ga0082395_10239321	F000344	MRPRHPHAAESGVGKHTARESESAQACAAGKERVANAHPQKLAPEP
Ga0082395_1024051	Ga0082395_10240511	F041277	MRPETPLAVENSVGDLAAHVAPNASPGKRAWRTPTPHFGPRSDFG
Ga0082395_1026715	Ga0082395_10267152	F021791	MLVRFYVDYRIKPHVPPFEQIPANFVKFQFCNNTTQVEYFTR*
Ga0082395_1031190	Ga0082395_10311901	F047147	KGLVREEQLLYDLCLLGTVTVEITQILTRTGTTWT*
Ga0082395_1031965	Ga0082395_10319652	F009040	DPKPLQAAVVKSDGGERCRKVGTKIPAGKAQRGERKRTADEVSKAD*
Ga0082395_1034737	Ga0082395_10347371	F082867	RVVKPLTFTSNTLVLSVNPALTDLSNTLATIYRQYRVTELSFTFQASSDAGAYALAMQYVPQIGGTPSTLPTLLSEFEGPAVGYYETGRGREYTFRVPSDVLNAMGLNYYSTRTAVTPIQDPDILTQGLMVFLTSSPNIPVVAYMHVKYEFQTLEDPSFLASLFDDKKQDNDMLVVPRPGDVKGATWDENARGSIRGQSLGINHFSSVTQP*
Ga0082395_1034739	Ga0082395_10347391	F082867	RVVKPLTFTSNTLVLSVNPALTDLSNTLATIYRQYRVTELSFTFQASSDAGAYALAMQYVPQIGGTPSTLPTLLSEFEGPAVGYYETGRGREYTFRVPSDVLNAMGLNYYSTRTAVTPIQDPDILTQGLMVFLTSSPNIPVVAYMHVKYEFQTLEDPSFLASLFDDKKQDNDMLVVPRPSLNSVGDVKGATGYENARGRIRGQSLGNNHFSSVTQP*