3300006228: Marine sediment microbial communities, 0.7 km from oil contamination, elevated hydrocarbon, Gulf of Mexico ? BC139

Overview

Basic Information

• IMG/M Taxon OID: 3300006228
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116840 | Gp0121732 | Ga0082388
• Sample Name: Marine sediment microbial communities, 0.7 km from oil contamination, elevated hydrocarbon, Gulf of Mexico ? BC139
• Sequencing Status: Permanent Draft
• Sequencing Center: Yale Center for Genome Analysis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 26796652
• Sequencing Scaffolds: 2
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Eukaryota → Metamonada → Fornicata → Diplomonadida → Hexamitidae → Hexamitinae → Trepomonas → unclassified Trepomonas → Trepomonas sp. PC1	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Sediment Microbial Communities From Different Distances From Oil Contamination, Gulf Of Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Sediment Microbial Communities From Different Distances From Oil Contamination, Gulf Of Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine benthic biome → marine benthic feature → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.3
  • Long. (^o): -88.2
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061006	Metagenome / Metatranscriptome	132	Y
F082866	Metagenome / Metatranscriptome	113	Y
F082867	Metagenome / Metatranscriptome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0082388_120390	Not Available	751
Ga0082388_123765	All Organisms → cellular organisms → Eukaryota → Metamonada → Fornicata → Diplomonadida → Hexamitidae → Hexamitinae → Trepomonas → unclassified Trepomonas → Trepomonas sp. PC1	1528

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0082388_120372	Ga0082388_1203721	F061006	GAEPFHQMDSIPIDRRTPEQKAKDVDDILNWQRNPRDHEGPETEPFRKIDQMLPQKAGQSPKARANDIDNTLTWLRNRGIEEPCDEDSPFQKVKSIPMPDSRSPQQKAKDVEDALNWVRNPKDSESSPETADFAKIDQLLPKKPGQKPQDRAKDLDNALSWVRNRGVDEPEFGGAEPFHQMDSIPIDRRTPEQKAKDVDDILNWQRNPHDHEGPETEPFKKIDQILPGKAGQTPEARANDIDNTLTWLRN
Ga0082388_120390	Ga0082388_1203901	F082867	MTGGRKKGSRSRRVHHINDINHNDTNITVQYRVVKPLTFSSNTLVLSVNPSLTDLSTTLATIYRQYRVTELSFTFQCSDAAGAYALAMQYVPQIGGTPSTLPTTLAEFEGPAVGYCETGRGREYTYRVPSHVLNAMGLNYYATRTGVTPIQDPDILTQGLMIFLTSTPATPIVAYMHVKFEFQTLEDPSFLAKLMHDDEEADTLVVPRAKADSLKSMTWNQL*
Ga0082388_123765	Ga0082388_1237653	F082866	MHHQLPNRKRTLNLLLRKASGSGKICVLSQIEPQTPRLVVSFRQYLQVSVLQPYSPQNPKPSGFPRNAS*