NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300006214

3300006214: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 246515023



Overview

Basic Information
IMG/M Taxon OID3300006214 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0063646 | Gp0052817 | Ga0099388
Sample NameHuman buccal mucosa microbial communities from NIH, USA - visit 1, subject 246515023
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size10818915
Sequencing Scaffolds1
Novel Protein Genes1
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081510Metagenome114N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0099388_100003All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes51894Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0099388_100003Ga0099388_10000317F081510MKLPKLPNIQTIKSTAKSAMVTTKILGKKYAPVVLLGVGLVGYGYSVYAGIKSGKKLEATKSKYEAKDAAGEEYTRFEVVKDVAKDVAVPVAVATASTAAIVLGFAIQTNRLKAVSAALAMVTEEHARYRLRAKEVLDEATFKKIDAPMETKTVELDGKEVEVESIVPNEGDFYGQWFKYSSNYASDNPDYNESYIKEADKYLTDRMMKKGVLTFGEVLEELGFDVPRAALPFGWTDTDSFYIEWDAHEVFDEEKQEYDLQFYVRWKTPRNLYATTSIKDFVPKKTRKELN*

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