3300006213: Combined Assembly of all intestinal microbial_metagenomes from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA

Overview

Basic Information

• IMG/M Taxon OID: 3300006213
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114764 | Gp0115735 | Ga0081460
• Sample Name: Combined Assembly of all intestinal microbial_metagenomes from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Texas Southwestern Medical Center
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1020957121
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. 26_22	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Intestinal Microbial Communities From Inflammed Rag1 Mice From Utswmc, Dallas, Texas, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Unclassified → Unclassified → Mouse Feces → Intestinal Microbial Communities From Inflammed Rag1 Mice From Utswmc, Dallas, Texas, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: UT Southwestern Medical Center, Dallas, Texas, USA
• Coordinates
  • Lat. (^o): 32.815891
  • Long. (^o): -96.846336
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F047755	Metagenome	149	Y
F082888	Metagenome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0081460_1001077	All Organisms → cellular organisms → Bacteria	66348
Ga0081460_1010780	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	12834
Ga0081460_1038625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. 26_22	4492
Ga0081460_1114383	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1681
Ga0081460_1147099	All Organisms → cellular organisms → Bacteria	1335

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0081460_1001077	Ga0081460_100107770	F047755	MIPDFKRKEIFNMENEKVKYLIDMINDMDIKDKLRLAICMSQSEWSGLIYNTKENFEKFDSMLKDIDEEYKTTLINFGKYKLVMFIMAKLMEMETTEQNEVALYLFNNIKAI*
Ga0081460_1010780	Ga0081460_10107809	F013656	LEKRYKEPNRIEMETTINVLYEENVISIYTNKPDLQKQLCKSIGEPEKEFKKGKSILASRWKIPLNEKSKISKMMLKANIFQL*
Ga0081460_1038625	Ga0081460_10386257	F013656	VKKIYKTPNKSETETTINVLYGEERLTIYTNKVDLQKQLNKLLGEPTKELKIKRSIAGSIWEISFKEKSKISKVLLKANIYEL*
Ga0081460_1114383	Ga0081460_11143833	F047755	MGENKVENVINIIKDMNIKDKLRLAICMNDSQWLTLNYDRKEMYNKFDIHLRKLDEEYRTTLINFGQSKYFIINFTMAKLMEMEQTDRNKIALYLFNSIEE*
Ga0081460_1147099	Ga0081460_11470993	F082888	MAQIIEIIVENKNYQIEWALSEYFGELKGKKFMLNKMAAEQIKVINNLSDTAKILLSAVAGAVIQHLIDNNCPIDNIFENGYFIVKS*IMNKL*