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Sample 3300006201
3300006201: Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t30_691P_inflammed - viral_metagenome
Overview
| Basic Information |
| IMG/M Taxon OID | 3300006201 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0114764 | Gp0121227 | Ga0081180 |
| Sample Name | Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t30_691P_inflammed - viral_metagenome |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of Texas Southwestern Medical Center |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 127511103 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 4 |
| Associated Families | 3 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 3 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | Intestinal Microbial Communities From Inflammed Rag1 Mice From Utswmc, Dallas, Texas, Usa |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Mammals → Digestive System → Unclassified → Unclassified → Mouse Feces → Intestinal Microbial Communities From Inflammed Rag1 Mice From Utswmc, Dallas, Texas, Usa |
| Alternative Ecosystem Assignments |
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
| Location Information |
| Location | UTSWMC, Dallas, Texas, USA |
| Coordinates | Lat. (o) | 32.73 | Long. (o) | -96.97 | Alt. (m) | N/A | Depth (m) | N/A |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F039198 | Metagenome | 164 | Y |
| F047755 | Metagenome | 149 | Y |
| F082888 | Metagenome | 113 | Y |
Associated Scaffolds
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|
| Ga0081180_1002694 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 5466 | Open in IMG/M |
| Ga0081180_1003418 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 4280 | Open in IMG/M |
| Ga0081180_1013973 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium | 1223 | Open in IMG/M |
| Ga0081180_1025915 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 734 | Open in IMG/M |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0081180_1002694 | Ga0081180_10026942 | F039198 | MQITSNEISNTKYMQIYLTKDELEKQETKEIIEKYKKEKYHISIFISGKENYPEILEKIIVKQVELNCNVC* |
| Ga0081180_1003418 | Ga0081180_10034184 | F047755 | MKTSKQRIKRKIMILDFKGGKLNMENEKVKYLIDMINDMDIKDKLRLAICMSKSEWTGLIYNTKENFEKSDYMLKSIDEEYRTTLINFGKYKIVMLAMAKLMEMETTEQNKVALYLFNNIKIL* |
| Ga0081180_1013973 | Ga0081180_10139732 | F082888 | MAQIIEIIVENKNYQIEWNLSEYFGELKGKKFMLNKMAAEQIKVVNNLSDTAKILLSAVAGAVIQHLIDNNCPIDNIFENGYFIVKS*I |
| Ga0081180_1025915 | Ga0081180_10259151 | F047755 | VKNVINIIKDMNIKDKLRLAICMNDSQWLTLNYNRKEMYNKFDTHLRKIDEEYRTTLINFGQSKYFIINFTMAKLMEMEQTDRNKIALYLFNSMSMLC* |
