3300006187: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_500_plan - 1398105537976 (version 2)

Overview

Basic Information

• IMG/M Taxon OID: 3300006187
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118793 | Gp0095082 | Ga0097678
• Sample Name: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_500_plan - 1398105537976 (version 2)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 477868214
• Sequencing Scaffolds: 10
• Novel Protein Genes: 16
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta	1
Not Available	7

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Bioreactor Microbial Communities From Cape Town, South Africa
• Type: Engineered
• Taxonomy: Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: South Africa: Cape Town
• Coordinates
  • Lat. (^o): -33.927
  • Long. (^o): 18.452665
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001866	Metagenome	624	Y
F007322	Metagenome	353	Y
F017165	Metagenome	242	Y
F087441	Metagenome	110	N
F092364	Metagenome	107	Y
F094111	Metagenome	106	Y
F095751	Metagenome	105	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0097678_1047106	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	1603
Ga0097678_1056094	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta	1391
Ga0097678_1057394	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	1365
Ga0097678_1086240	Not Available	960
Ga0097678_1095803	Not Available	874
Ga0097678_1108286	Not Available	783
Ga0097678_1111496	Not Available	763
Ga0097678_1118305	Not Available	723
Ga0097678_1138876	Not Available	625
Ga0097678_1145794	Not Available	598

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0097678_1009603	Ga0097678_10096035	F092364	LYTKGIGLTINDILRNQIQPNTSFGNQSALVQSAAGITMIMFIIGFINGIFSLITFRNKELRKVGCVLYLLASSITSLLTITMLTIKFWFVVLIQLYSTVNTSILRTDCVFLGPVLKLCLYLDGWLNACVAIERAVNVSKGVNFNQNLSKRVARWIILILLILIMGSIVHEPIHHDLFEYTIQKHKPMNNYLTVNMSMANDTNAEYENEYHVLCVIRYSRSVQIYNTITLFIHLLVPFLANLCSALFIIFGTARRRSAAQKNETFKEIVRKQMSEHKQLLISPFILLILAMPRLIVSLASGCVDPSQNHWLYLCAYFVSFTPPMLIFTVFVLPSELYSKTFKESMTQCRICK*
Ga0097678_1012978	Ga0097678_10129782	F092364	LYTKSIGLTINDILRHQIQSNESFNNQSILVQAAAGITMIMFLIGFISGILSLITFKNTELRKVGCVLYLLASSITSLLTITIFTIKFWLVVLIQLYSIVNTSILQIDCVFIGPILKLCLYLDGWLNACVAIERTVNVSKGIKFNKTKSKRLARWTILILFILIMGSIVHEPIHHELFEYTNPKSKSLSNNSPVNISMKNYTNSEYEIEYNILCVIRYSRSVEIYNTITLFIHLLVPFTVNLFSALFIIFGSARQRTTVKKNQTFKEHVFTQMSEHKQLLISPFILLILAMPRLIISLISGCVDPSQNPWLYLCAYFISFTPPMLIFVVFVLPSELYRKNFKDSIAQCRRQNPQ*
Ga0097678_1019331	Ga0097678_10193312	F095751	MRFKPNILTEIQKIVAQNFQPPSVDDHHPYVAVYVRRSDKVQSKEMSQAYTLKQYFDLFDSDARRANISTVYLNSEDARVSNEFIEINKEKQGYYKLLTIKTTKDMVYGKLTQMSREQREKITIEFLTDLYIEANADLHSGTLTSNWCRLVDEIRLVLGKMLPFYTPENKYWMDY*
Ga0097678_1041466	Ga0097678_10414661	F092364	VNLFIITIKTNLFLDKKHSNCIIGDQCNLYAKGIGLTINDILRNQIQPNTSFGNQSTLIQSAVGITMIMFLIGFINGIFSFITFRNKELRRVGCVLYLLASSVTSLLTITMFTIKFWFVILIQLYSTVNTSILRTDCVFIGPILKVCLHLDGWLNACVAIERAVNVAKGVKFNKTKSKYVAKWIIFIIPILIIITIIHEPAHHELFEHTTQKYKFANNNLTVNMSIETEHNLLCVIRYSRSVQTYNTFTLFFHLLLPFVANLCSALFIIFGTARLRSGAKKNQTFKAHIIKQMKEHKQLLISPVILLILTMPRLILSLVSGCVDPSSNPWLYLCGYFISY
Ga0097678_1047106	Ga0097678_10471062	F094111	LTLSYNQSRFRPNATWNLNATSFSNRSFFGTQPYSIFVNSNNSIYIPNRQTSEIHIWTNENDVNPTKTISGNLSDPLSLFVTTNGDIYVDNGTNGRVDKWIVENETWISVMNVTSQCYGLFIDIYQSLYCSMYLNHRVDKKWSNGTTAI
Ga0097678_1056094	Ga0097678_10560942	F087441	MEPLAIYGRSLIETNTNLSRSLSISILDEKGNEISFETNSDSIEFFIPRDPNLRIPPMILTNETFHSLNLTTDLPISIHFEIKANFSYRFVYKFDKQSIFTNSIEVNQSYFTFMIDNQQTVGHRTLIFGLEGENQEYEYRVYSSGCYYLNKENEWKGDGLRVGPKTNLSQTHCFSTHF*
Ga0097678_1057394	Ga0097678_10573941	F094111	MIFNDVTSSFSFKMFLRIWIGLFIYEQQYFTLATFSFNQPRFRPNATWNSNATTFADQSFLGAQPVTIFVNSNNSIYLSNRLTGQIHIWQNGNDLYPTKTIKGNLSSPASLFVTTNGDIYVDNGKTNGSVDKWIRENETWISVMNVTSACYALFIDIYDNLYCSVFENHQVDKTWSNGTT
Ga0097678_1086240	Ga0097678_10862402	F001866	MIEVVSDDDSALIGDAHSMRIAELAWLIAFGAELEQERAIDRRQYLHSLIPSIRDDDSMSIIIDRNACWTIELAWLRSSLADGEQEREIDQRQEHQSMVVRIDDDDATMMLVDRNASRILELEIS*
Ga0097678_1095803	Ga0097678_10958032	F001866	MAFGRECLQSKVVVLGDDDSALVGDANSFSIAKLAWLEALRAELEQERAIDRRQYLHSIVVSIADDDSMSIIIDRNACRKYELARLVAARADREQEREIDRRQEHQSVVVGIEDDDAAMMLVDRNASRKGKLEI*
Ga0097678_1108286	Ga0097678_11082861	F017165	HRGLIAFSAGNRVHVIGANQWLADTFTWRPDRHRYAPSWIKQAVLTMTMIRSVIDECSAMSMIPNELLFEIFSFL*
Ga0097678_1111496	Ga0097678_11114961	F007322	MVVAISDEDAIMIVIDRKAIRTQELAWLVAFLAELGHERAIITREYLHSMIEAIDNEQETLTMVERQAHRVIEQAIGIAMLLGTDRELDSSITIKSIVSHLFLFSLSLKTTKR*
Ga0097678_1118305	Ga0097678_11183051	F007322	MIVIDRSARWLIELTWLAAFLAELGHERAIIAREYLHSMIVAIGDEQETSMMVERQAHRAVEQAISIAFSLGADRELDSSIIIKSIVSHLSSNLSLSLTTTKRCSKLQPAQTNEMKI*
Ga0097678_1138876	Ga0097678_11388762	F017165	VAFDEHRGLIAFSAGHRVHVIGANQWLADTFTWRPDLHRYAPSWMKQAILTMTMIRSVVDECSAMSMIPNELLFEIFSFL*
Ga0097678_1145794	Ga0097678_11457942	F001866	MAFVSERLKLMVVGVGDDDSTLIGDAYSSRILELAWLIAFGAEHEQERAIDRRQYLHSIVASIRDDDSMSIIIDRNACWGVELTRLTSLLAANVEQEREIDRRQEHQSIVAGIG
Ga0097678_1151454	Ga0097678_11514541	F095751	NWYRTQLIFYLMRYKPSVLAHVRNVVAQNFNPPSVEQHRPYIAVYVRRSDKVQFKEMSQAYTLKQYFDLFDNDVQRVNISTVYLNSEDERVFNEFNEINKEKNGYYKLITIKTTKNVVYRKMTGMPRAQRGKIVLEFLTDLYIEAHADLHAGTLTSNWCRLVDEFRLVLGKKIPYYTPEKRFIMDG*
Ga0097678_1170151	Ga0097678_11701511	F007322	MIASISDEDAIMIVIDRNGSRILELAWLAAFLAEVGHERGAIIITREYLHSMSIGDEQEISMMVERQASRIVQLAIGITFLLGADRELDSSITIKSIVSHLF