3300006147: Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t14_691P_inflammed- viral_metagenome

Overview

Basic Information

• IMG/M Taxon OID: 3300006147
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114764 | Gp0121215 | Ga0080710
• Sample Name: Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t14_691P_inflammed- viral_metagenome
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Texas Southwestern Medical Center
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 211094793
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae	1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Archamoebae → Mastigamoebida → Entamoebidae → Entamoeba → Entamoeba dispar	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Intestinal Microbial Communities From Inflammed Rag1 Mice From Utswmc, Dallas, Texas, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Unclassified → Unclassified → Mouse Feces → Intestinal Microbial Communities From Inflammed Rag1 Mice From Utswmc, Dallas, Texas, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: UTSWMC, Dallas, Texas, USA
• Coordinates
  • Lat. (^o): 32.73
  • Long. (^o): -96.97
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F039198	Metagenome	164	Y
F047755	Metagenome	149	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0080710_1000610	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	32903
Ga0080710_1024354	All Organisms → Viruses → Predicted Viral	1236
Ga0080710_1036701	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	900
Ga0080710_1048356	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae	719
Ga0080710_1058986	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Archamoebae → Mastigamoebida → Entamoebidae → Entamoeba → Entamoeba dispar	607

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0080710_1000610	Ga0080710_100061031	F013656	LEKRYKEPNKLELETTINVLYEENVISIYTNKPDLQKQLCKSIGEPEKEFKKGKSILASRWCIPMSEKSKISKMMLKANIFEL*
Ga0080710_1024354	Ga0080710_10243542	F039198	MKITSTKISNVNYVQIYLTEEELKKQETKEVIEKYRKEKCNVAIFQIGKENYPEILKKIIEKQVELSTYVC*
Ga0080710_1036701	Ga0080710_10367012	F047755	MENEKIKYLIDMINDMDIKDKLRLAICMSQSEWSGLIYNTKENFEKFDSMLKDIDEEYKTTLINFGKYKLVMFIMAKLMEMETTEQNEVALYLFNNIKAI*
Ga0080710_1048356	Ga0080710_10483562	F013656	MKKIIKEEKNEKKRYKEANKSETETTINILYGENELSIYTNKIELQRELNKILGEPTKEYKKGRSIAGSIWNVPLSEKSKISKIILKANIFEL*
Ga0080710_1058986	Ga0080710_10589861	F013656	MKTENKKKSQKKIYKEANKSETETTINILYGEKELSIYTNKIDLQRELNKILGEPTKEYKKGRSIIGSIWNLPLSEKSKISKIVLKANIFEL*