3300006133: Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t1_693P_control - viral_metagenome

Overview

Basic Information

• IMG/M Taxon OID: 3300006133
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114764 | Gp0121198 | Ga0080694
• Sample Name: Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t1_693P_control - viral_metagenome
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Texas Southwestern Medical Center
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 102242439
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Intestinal Microbial Communities From Inflammed Rag1 Mice From Utswmc, Dallas, Texas, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Unclassified → Unclassified → Mouse Feces → Intestinal Microbial Communities From Inflammed Rag1 Mice From Utswmc, Dallas, Texas, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: UTSWMC, Dallas, Texas, USA
• Coordinates
  • Lat. (^o): 32.73
  • Long. (^o): -96.97
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047755	Metagenome	149	Y
F082888	Metagenome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0080694_1000866	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	11479
Ga0080694_1018898	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	872

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0080694_1000866	Ga0080694_100086610	F082888	MSQIIEVIVENKNYQLEWALSEHFEELEGKKFMLNKMAAEQIEMINNLSNTAKILLSAVAGAVIQHLIDNNCQIDNIFENGYFIVKN*FINSNCTTKNINNYSKPI*
Ga0080694_1018898	Ga0080694_10188982	F047755	MENEKVKYLIDMINDMDIKNKLRLAICMSQSQWSSLIYNTKENFGKCKLVMFAMAKLMEIETTEQNKVALYLFNSIS*