3300005997: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_750_biof (version 2)

Overview

Basic Information

• IMG/M Taxon OID: 3300005997
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118793 | Gp0095085 | Ga0066255
• Sample Name: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_750_biof (version 2)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 379281268
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Bioreactor Microbial Communities From Cape Town, South Africa
• Type: Engineered
• Taxonomy: Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: South Africa: Cape Town
• Coordinates
  • Lat. (^o): -33.927
  • Long. (^o): 18.452665
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017165	Metagenome	242	Y
F019507	Metagenome / Metatranscriptome	229	Y
F049152	Metagenome / Metatranscriptome	147	Y
F055860	Metagenome / Metatranscriptome	138	Y
F081545	Metagenome	114	Y
F094111	Metagenome	106	Y
F095751	Metagenome	105	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0066255_1061559	Not Available	1038
Ga0066255_1066672	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	976
Ga0066255_1090122	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	734
Ga0066255_1116617	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	584
Ga0066255_1125175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	557
Ga0066255_1139349	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	519
Ga0066255_1146802	Not Available	501

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0066255_1061559	Ga0066255_10615591	F049152	MTQTEPVLRPHRPDSLLEKAAEQLAEVFGVHRQIDKLLYHSAKEVGGVEFASIFEPVPVERLTARPRPDAINHDQAFLRSNPLSSDDTERALGLLEILHGQHAPANVEVFARFAEREKFFERLADGRSFIFVGSHLEFQDVGFNLGYLTRAAHLHGFDRLDTRTTLMIGRLLGYLEVMELNVI
Ga0066255_1066672	Ga0066255_10666722	F081545	MDHQQLRSIIIKLESRLSDDDRERLHFYLGNDIPRKIREDASLRDTLCLMDSLFDRDKINEQDFTFLIRAFEQI
Ga0066255_1086064	Ga0066255_10860642	F095751	EMSQAYTLKQYFDLFDNDVQRVNISTVYLNSEEEGVFDEFNDFNKEKQGYYKLIRINVTKDVVWGKITGMSREQREKITIEFLTDLYIEAHADLHAGTLTSNWCRLVDEFRLVLGKKIPYYTPEKRFIMDG*
Ga0066255_1090122	Ga0066255_10901222	F081545	MIMDHQQLRSIIIKLETRLSDDDRERLHFYLGNDVPRKIRDDASLRGTLRLMDSLFDRDKINEQDFTFLIRAFECT
Ga0066255_1116617	Ga0066255_11166171	F055860	VQPLDRSHVLASISIIDHDVYINYHKGVHLDQYRVSTTSQWTLEKRFSKSDCCEAKDIGIRDVRCDAQSICLSIMQQGDLKWRLDIMSRDMKRIRRGTPMDAGENQHKFFSMLISLHDQRWLFVNWYTNKLWLVDQEGKPGLIKDSKIKNIRNICISPNGTYMAVRTEKPNTLKLYKLV*
Ga0066255_1125175	Ga0066255_11251751	F019507	MDIRQLVDIAIDEDPRAPCLWVPSELFPELCAAIGQQPNLVGAVIYRNKTIRDGGPYCDITTRAP*
Ga0066255_1139349	Ga0066255_11393491	F094111	EMFLRIWIGLFIQQQYFTLATFSFNQPRFRINATWNSIATTFAKQSFVGQYPIGIFVNSNNSIYIPNRRTGQIHIWLNENHLNSTKTIEGNLLELLSLFVTTNGDIYVDNGYKNGRVDKWIVENERWISVMNITSTCFGLFVDIHESLYCSMQDNNRVQKMVKRYNNNRCWN
Ga0066255_1146802	Ga0066255_11468021	F017165	RVHVIGANQWLADTFTWRPDRHRYAPSWMKQAISTMTMIRSLVDESALSMIPNEILFEIFSFL*