3300005963: Hot spring microbial streamer communities from Conch Spring, Yellowstone National Park, USA - C T=80-84

Overview

Basic Information

• IMG/M Taxon OID: 3300005963
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0067861 | Gp0054662 | Ga0081519
• Sample Name: Hot spring microbial streamer communities from Conch Spring, Yellowstone National Park, USA - C T=80-84
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 46964575
• Sequencing Scaffolds: 16
• Novel Protein Genes: 17
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae	1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	3
Not Available	7
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → Pyrobaculum ferrireducens	1
All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Thermocrinis → Thermocrinis ruber	1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Butyrivibrio → unclassified Butyrivibrio → Butyrivibrio sp. XPD2006	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → spring water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Conch Spring, Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.5564135
  • Long. (^o): -110.8321631
  • Alt. (m): N/A
  • Depth (m): 2194.56

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013155	Metagenome / Metatranscriptome	274	Y
F021443	Metagenome / Metatranscriptome	219	Y
F038745	Metagenome / Metatranscriptome	165	Y
F043237	Metagenome / Metatranscriptome	156	Y
F075483	Metagenome / Metatranscriptome	119	Y
F100050	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0081519_100074	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae	19734
Ga0081519_100406	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	7344
Ga0081519_100540	Not Available	6083
Ga0081519_102220	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → Pyrobaculum ferrireducens	2474
Ga0081519_102631	All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Thermocrinis → Thermocrinis ruber	2215
Ga0081519_103060	Not Available	2023
Ga0081519_103745	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum	1762
Ga0081519_104616	Not Available	1529
Ga0081519_104757	All Organisms → cellular organisms → Bacteria → Proteobacteria	1498
Ga0081519_105689	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	1329
Ga0081519_105701	Not Available	1327
Ga0081519_107898	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	1065
Ga0081519_109001	Not Available	976
Ga0081519_112181	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Butyrivibrio → unclassified Butyrivibrio → Butyrivibrio sp. XPD2006	773
Ga0081519_112296	Not Available	767
Ga0081519_112895	Not Available	737

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0081519_100074	Ga0081519_10007434	F038745	MDKAVMSICGELMQASLTFSAYYPLCLNSPSCAYAEAVERLIRRAASARDAEELIKVMDGRIKLEELGLPAPALKTLAEELGPEPRWLDALAASFFRLYLGIHRQRRLDGRDLALALCLWAQRRRREDPWNPLWRVIMLKPEKLYTAEEAREALAINEVLFRRLWRRALANEHAYGFQLILAALSLMAIPTRSV*
Ga0081519_100406	Ga0081519_1004069	F013155	MELYQIIIVAIALVNLAVAVWLLRLIIPVWQTLRKVVFVVDQYDFDKLAKQFLNGEKPLSETIHIKATENKEEGYKEIIITRAYKRPLDPREVQENFVRQMAEKLQ*
Ga0081519_100540	Ga0081519_1005405	F100050	MDDVFFPMDVIVRYILATLLALVGGLVGYYLIPYEPFGAVGNVLFMGALFGFIAGFLGFTGFFGNVVNAFLVSFILWFVLPGQWFVIWTGGNAGYMVGNVLGQLGRLSAVKKIEAEAL*
Ga0081519_102220	Ga0081519_1022202	F013155	MELYQIIIVAIALVNLAVAVWLLRLIIPVWQTLRKVVFVVDQYDFDKLANQFLNGEKPLSETIHIKTTENKEEGYKEVIITRAYKRPLDPREVQENFVRQMAEKLQ*
Ga0081519_102631	Ga0081519_1026312	F043237	MELERTARYIAQLSSRGYKYAVVGKLARYDKKLVKRLEYEGFVFYLCRFQTKKEVVEYCLERAEGTFRVYCLSAKPLEFPNAPLKLHYDEKTKRLRLLAQRSFINECLRVIERASSLKYPNHKMYTIKVNEALRNLYSILAYTYNDRERLRAIKRKVKHLFVSALKENYGIEPKKAMEEYRRFVVKFSDVLKKKQRANSSTS*
Ga0081519_103060	Ga0081519_1030603	F021443	MKCLLNDEKLIFIFRFFSVSCYNGYGYYQTNGILSLAIMDLVFKIINQQKRKSIILKKRKPIIHLLNYVDILNSNFISNKFDITFSLKNNHKTQLVYNLHSYRNSYRRRYYKDFYKDNLKVIERKNLCIIRAEHDYASEIQPKNLNLVSMLMHILQKEEIDMIVGDGIIFYCVFLM*
Ga0081519_103060	Ga0081519_1030604	F021443	MICLLNYKKISFVFTSSYVRCYNYVYNYYQINGMLSFAVIDLVFKIIKQQKGKYIILKKRKPIIHLLNYVDILNFNNNCNKLAITLPLKNNYKTQLIHNLYLHRNSYRRRYYEDLYKDRLKVIEHENLCIIRLEDDYDNTIQPKNLNLAAMLMHILEKKEVDMIDVSGIIFYCVFLM*
Ga0081519_103745	Ga0081519_1037453	F013155	MELYQAVVIAIALANLAVTVWLLRLLLPLWRYLQKVVFVVDQYDFDRLVNQFLNGEKPLSETIHIKTTENKEEGYKEIIITRAYKRPLDPKEIQENFVRQMAEKLQ*
Ga0081519_104616	Ga0081519_1046161	F021443	MKCLLNDEKLIFIFVFPSVLCYNGYSYYQTNGILSFAVMDLAFKIINQQKRKFIILKKRKSIIHLLNYVDILNSNFNGSKFDITFSLKNNYKTQLIYNLHSYRNSYRRRYYKDFYKDGLAVIERENLCIIRLEHDYASEIQPKNSNLVTMLIHILDKEGIDTLVGDGIIFYCVFLM*
Ga0081519_104757	Ga0081519_1047572	F038745	MQISLVFSAYYPLCSGGPPCDFAEAVERLIRRAASARGAEELVEVMEGRVKLEELGLPAPALEDLAEELGPEPRWLDALAASFFRLYLDMHRRRRVDGRDLAFALCLWAQKKRREDPRNPLWRAAKLEPGRLYTEEEAREALEINEALFRRLWRRALAFHRGEKAYGFQLILAALSLMAVPPRSV*
Ga0081519_105689	Ga0081519_1056892	F013155	MELYQIIIVAIALANLAVTVWLLRLLYPVWQTLRKVVFAMEHYDFEKLTQQFLNGEKPLAENVVIKTIDKKEEGYREISIIRTYKRPLDPREVQENFVRQMAEKLQ*
Ga0081519_105701	Ga0081519_1057012	F021443	MICLFNYKKISFVFTSSYVKCYNYDYNYYQTNGMLSFAVMDLVFKIINQQKRKSIVLKKRKPIIHLLNYIDILNFNNNCDKLAITLPLKNNYKTQLMHNLYLYRNSYRRRYYEDLYKDGLKVIEHKNSCIIRLEDDYDNTIQPKNLNLASMLMHILEKKEVDMIDVSSVIFYCIFL
Ga0081519_107898	Ga0081519_1078981	F075483	MIELLLVQAVTTAALAFFVIKLRRELWPMFAMAKSGEVGFWVRTVDVLAVETPQLDASKVVIKVRWLFSEEIHMKYRLRIYDVAMHPYRRHHYVRWRAWMQGDNRYKCEVEKPRGLSRIYTKAIDVFCREVKKDEKKEVVILPSRWRKRRYRRWTKPEPSRGAPP*
Ga0081519_109001	Ga0081519_1090011	F021443	MKCLLNDNKLTFMFGSSYVTCRNYRNCGYSYYQTNGMLSFAAIDLVFKIIKIMKQQKRKSIVLKKRKSIIHLLNYVDTLNFNFNSNKFDIVFSLKNKYVRQLTYNLYLHRSLYRRRYYKDFYKDNLIVIERENLCIIRLEDDYVSRIQPKNLNLATMLMHILEKEEIDMIVGDGIISYCVFLM*
Ga0081519_112181	Ga0081519_1121811	F021443	MKYLLNDEKLIFVFRSSYVTCHNYGYGYYQTDGILSFAVMDLAFKIIKQQKRKSIILKKRKPIIHLLNYVDILNSNFNSNKFDIIFSLKNNYKTQLIHNLHSYRNSYRRRYYEDLYKDGLIVIERKNLCIIRLEYDYASRIQPKNLNLVSMLMHILEKKEIDIDVNGIIFYCVFLM*
Ga0081519_112296	Ga0081519_1122961	F021443	MKYLLNDEKLTFTFRSPYVTCHNFDYGYYQINGILSFAVMDLAFKIINQQKRKSIVLKKRKPIIHLLNYIDTVNSNFNSNKFDIIFSLKNKYETQLIHNLYLYRNSYRRRYYEDLYKDGLIVIERKNLCIIRLEYDYASRIQPKNLNLVSMLMHILEKKEIDIDVNGIIFYCVFLM*
Ga0081519_112895	Ga0081519_1128951	F021443	MKYLLNDEKLTFTFKSSYVTCHNYSYGYYQTNGIFSFAVMDLAFKIINQQKRKSIVLKKRKSIIHLLNYIDTLNFNFISNKFDITLPLKNDYKTQLIYNLYLYRCLYRREYYKDFYKDGLIVIEHENSCTIKTEYDYASRIQPKNLDLATMLMHILEKEGIDTINGDGIIFYCVFLM*