| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300005927 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114820 | Gp0116315 | Ga0075130 |
| Sample Name | Saline lake microbial communities from Deep Lake, Antarctica, in enrichment culture - Antarctic Deep Lake Metagenome VIREN14 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 45224989 |
| Sequencing Scaffolds | 26 |
| Novel Protein Genes | 26 |
| Associated Families | 23 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Haloferacalesvirus | 1 |
| All Organisms → Viruses → Predicted Viral | 2 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natronorubrum → Natronorubrum halophilum | 1 |
| Not Available | 14 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria | 2 |
| All Organisms → cellular organisms → Bacteria | 3 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Saline Lake Microbial Communities From Various Lakes In Antarctica |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake Enrichment → Saline Lake Microbial Communities From Various Lakes In Antarctica |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → saline lake → lake water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Hypersaline (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Deep Lake, Antarctica | |||||||
| Coordinates | Lat. (o) | -68.5563 | Long. (o) | 78.1877 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002325 | Metagenome | 571 | Y |
| F003128 | Metagenome | 506 | Y |
| F011984 | Metagenome | 285 | Y |
| F035608 | Metagenome / Metatranscriptome | 171 | Y |
| F043706 | Metagenome | 155 | Y |
| F047393 | Metagenome | 150 | N |
| F047394 | Metagenome | 150 | N |
| F051583 | Metagenome | 144 | N |
| F054792 | Metagenome | 139 | Y |
| F055308 | Metagenome | 139 | Y |
| F064414 | Metagenome | 128 | Y |
| F067270 | Metagenome | 125 | Y |
| F075651 | Metagenome | 118 | Y |
| F075727 | Metagenome | 118 | Y |
| F077964 | Metagenome | 117 | Y |
| F084902 | Metagenome | 112 | Y |
| F091299 | Metagenome | 107 | Y |
| F094519 | Metagenome | 106 | Y |
| F094632 | Metagenome | 105 | N |
| F096357 | Metagenome | 104 | N |
| F100063 | Metagenome | 103 | N |
| F102170 | Metagenome | 102 | N |
| F104109 | Metagenome | 101 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0075130_100041 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Haloferacalesvirus | 46821 | Open in IMG/M |
| Ga0075130_102080 | All Organisms → Viruses → Predicted Viral | 1782 | Open in IMG/M |
| Ga0075130_102184 | All Organisms → Viruses → Predicted Viral | 1715 | Open in IMG/M |
| Ga0075130_102250 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natronorubrum → Natronorubrum halophilum | 1678 | Open in IMG/M |
| Ga0075130_102281 | Not Available | 1666 | Open in IMG/M |
| Ga0075130_102580 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae | 1514 | Open in IMG/M |
| Ga0075130_102662 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria | 1479 | Open in IMG/M |
| Ga0075130_102921 | All Organisms → cellular organisms → Bacteria | 1391 | Open in IMG/M |
| Ga0075130_103122 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria | 1324 | Open in IMG/M |
| Ga0075130_103830 | All Organisms → cellular organisms → Bacteria | 1155 | Open in IMG/M |
| Ga0075130_104432 | Not Available | 1048 | Open in IMG/M |
| Ga0075130_105226 | All Organisms → cellular organisms → Bacteria | 941 | Open in IMG/M |
| Ga0075130_105387 | Not Available | 924 | Open in IMG/M |
| Ga0075130_105826 | Not Available | 882 | Open in IMG/M |
| Ga0075130_106123 | Not Available | 856 | Open in IMG/M |
| Ga0075130_106124 | Not Available | 855 | Open in IMG/M |
| Ga0075130_106185 | Not Available | 850 | Open in IMG/M |
| Ga0075130_107559 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae | 751 | Open in IMG/M |
| Ga0075130_108878 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 681 | Open in IMG/M |
| Ga0075130_109449 | Not Available | 656 | Open in IMG/M |
| Ga0075130_111016 | Not Available | 601 | Open in IMG/M |
| Ga0075130_111868 | Not Available | 573 | Open in IMG/M |
| Ga0075130_112636 | Not Available | 553 | Open in IMG/M |
| Ga0075130_113629 | Not Available | 529 | Open in IMG/M |
| Ga0075130_114357 | Not Available | 513 | Open in IMG/M |
| Ga0075130_114748 | Not Available | 505 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0075130_100041 | Ga0075130_1000413 | F051583 | MTLHVPLTVGRSAPEGTQPNMDYTNPEDVANIDEPTRQQEIGLLSGLIDGKFVCVNHRGFLVNRTDNGSIELSRDGEVLGGRYYVTENNFAGLIEWLNAKAALYGETA* |
| Ga0075130_102080 | Ga0075130_1020802 | F075727 | MERLNKKGWVARDFIIAMLLFSGTLAMFVLMIGSLASDYDNTDVVDAEFSAKFDKFSEDTDRAGEMWKSATSEGGLSLVGTADLLFFSTFRVISLVFSSVVAAGQQMAGFGEFFGIPSEISSIFMVLIFTILTVSIVFIIISSIRSGKEL* |
| Ga0075130_102184 | Ga0075130_1021841 | F100063 | SFDLWIRGLDRRGEGDRIEIDVSGVSVGECCGLGVLQGPDETRVDRSYQRYLNGTPDGELRYVVMIRDEIETDSDTEEVEIDANTVQLHPITGNYLPESIDGYVFGKID* |
| Ga0075130_102250 | Ga0075130_1022502 | F047394 | MTASTQPTETRAQTTNGSFQTDVSALQEMTERAVEILDSHGEPVTIARLVGTVVRLGARDEYRFETIVRVAQQYIDEECGGADR* |
| Ga0075130_102281 | Ga0075130_1022811 | F094519 | MDMIKQPEQLTAGVTMIGTSSWGSQTGGIGSIMGSTWSSKIIFDAQPDRVLSKYFIEFNDLMGNNDVTIVIPKIGDVNLMGGRAGSIEGVARVLTKFDSADNITVNLTSADVKLGGCSVSFETASATRVSIIEMAH |
| Ga0075130_102580 | Ga0075130_1025801 | F003128 | MQIDVSASDIKSEKRADDRGRVTLGSEFAGKTVTVAVLEVKDE* |
| Ga0075130_102662 | Ga0075130_1026623 | F003128 | MQIDVSASDIKSDRKADDRGRVTLGSEHAGKTVTVAVLEVEDEDDVRTDEYPH* |
| Ga0075130_102921 | Ga0075130_1029212 | F054792 | MAEQKINVKKLEIGIIKVTIIGDSPYMPEPMDMAVLEKYNKIKSKQNYDKDDLSEEEKVKAKFYYTEDNKYGIPARAIYNSMIRGSSYLFDIKQGGMRNIKEGVTIKGDILPLKFKKQTEICHWGRTSGMKGSPRKILRNAFYDWEVEITVEFNKANLSAEQIINVLNWAGFHIGVGGFRKEKTGNFGSFHIDLK* |
| Ga0075130_103122 | Ga0075130_1031221 | F011984 | MRPIICDCCQIRIDDSWAGPALEVKVHNGVDTDVSGDYCVDCAGDISDAIRSVIEDNKSDSINE* |
| Ga0075130_103830 | Ga0075130_1038303 | F064414 | MGMSDITSKLPFIGGEGGGSNIIYLLIGFAVLLICGFALWWFLKKRKTWNIKVEFKIPRNIKKVRTKEGTIKIIGTLNKEWGKGFYDAKKGSVFIKRKGKKAVAMKPFDVKQYLSTGNILTVVQTGIEDYRPIRDESYIELKDIDGSEGALVQAVIDTSESKSWKNTFEREAKMTYSIKNWIAEHGALVAM |
| Ga0075130_104432 | Ga0075130_1044322 | F035608 | MSLLDTNKIIRDYLTTSSTIVDPLIALVGARIYCPRIPENGTLPAISYFTRGGSATPYIPDMPNPSVQFDCWAADPIDAREIYRKLYDALQGIQNIAVGSNYILSAIEEGQGQDLVDEFIPNYFRTLCFFSIMLR* |
| Ga0075130_105226 | Ga0075130_1052262 | F077964 | MKTKRLLIVFSLILASFILMLYSTYAFAQTAESKSSPPTIQKISKTSYYYNYNITEVQKEPEGGGEAETFYQYNYVKIKGKPTKRKVLDAIEAAESSTVTAEVEAVATERSTAKTQLADIAALSYAQVDTYVDNTFGNLPAAQKNALKKLYKTVLAMLKQM |
| Ga0075130_105387 | Ga0075130_1053871 | F091299 | MKEEKENDKLENITGSGIEVTIKGKEYKLGIFGMRDLADFRQYIKGQRIKIIQATIVSMEEKLILINSILDSNVNETKELQTMDGVTFMLWRSLKKYQPELTLADVDDMIDLDNISEISNVLMNIGGKVKNSQKRAKKV* |
| Ga0075130_105826 | Ga0075130_1058264 | F075651 | NAMVKDEKKAVKQKAMFYFSEKLKCHVKKVPTGFVNGIIKSELENNTFYWFEDLRTHGKDERLFLDEIFDIKDYEDEVEE* |
| Ga0075130_106123 | Ga0075130_1061232 | F075727 | MINKINKKGWVARDFIIAMLVFSGVLAMFVVMIGSIANDYDNTDIISPDFSDKFDKFSENVDTGGEMWAASTGEGGLSLVGTADLLFFSTFKVISLVFDSVNIAWTQMVEFGEFFGIPSVISNIFVG |
| Ga0075130_106124 | Ga0075130_1061243 | F043706 | MRPILYGILSTALLVNLLFMALDTGQPSVWLLILCAVAIIFAGGAENRGSGR* |
| Ga0075130_106185 | Ga0075130_1061853 | F084902 | INNIAPKLRQLAGYEDGAGKGTYNTVSTDIKYEINKENLLHEIHKEDVLPAFREAYYNEAVNREI* |
| Ga0075130_107559 | Ga0075130_1075593 | F104109 | FMQELLNYVPEVIVVGNIEFAVAGAALALGFPKAARWVVERRTSTDLNGDGHVGKPPGDTSESQVEDAADRTGDK* |
| Ga0075130_108878 | Ga0075130_1088781 | F096357 | MNNLLDHPIIKRLHRESSVTLTDLLDRKLFIEPPAEPCGHIHPSAWDLFYQEDLQPPESERLRAARKRNPRLILAAALVVAGATGKLSEEQKNMAFYFTRYVEAHEYELDQLVRRSTGSHNSAEIRKEEAAERMETAFSLWLKLDKPERDRCAIIAKRMGYPVDTVRGWKRKGWRSG* |
| Ga0075130_109449 | Ga0075130_1094492 | F102170 | MSDDDETVIVMTKGRVYHTDETCKRITDRAREWDLDEALNDGRYECGHCQADENLGSKHHGEHLATKLSKADPDEVAPTEFDRERASVSLAWFVAVWLAIMAASTFTGVMLYFAGVLL* |
| Ga0075130_111016 | Ga0075130_1110161 | F075727 | NKKGWVARDFIIAMLVFSGVLAMFVVMIGSVANDYDNTNIISPDFSDKFDKFSENVDTGGEMWAASTGEGGLSLFGTADLLFFSTFKVISLVFDSVNIAWTQMAEFGEFFGIPSVISNIFVGLIFTILTVMIVFIIISSIRSGKEL* |
| Ga0075130_111868 | Ga0075130_1118682 | F002325 | QPNTTYVVFEYQSGDWDNGRVLSGVSERQMTALASSDTNNWRTYAGSNLNGSNDLGIQQMTAVFDGANSIIREDGVETAVGDAGNRDLGGLSVGYDAWDFDNYGKRRYADAYVSEIVVVNSGSVDLDFENQLLEKWGITA* |
| Ga0075130_112636 | Ga0075130_1126361 | F055308 | AKTSSGIGTFPYGFYDFEEFTDGQDIIANDAAFTAANDSSYGDTTPTFTAYNSYAKQGSVGSQFTTDVLEGVQYEMPQTIDSSTESKWVREFWMKGTETTSNATTHGMSDVVDASNTEMNIYGPSDGMNKGGVVRYYDGGGWVNIYSGISPGDWVWIHEEIDFPNSQTYTEVKDAPDGSVLGS |
| Ga0075130_113629 | Ga0075130_1136293 | F094632 | MQSTKQQIADRIAELEDKGMTGIDIARKIDVNVVTLYRYKAMLINRPHRRILKI |
| Ga0075130_114357 | Ga0075130_1143572 | F047393 | PKLLLGLLSVRGRPPPIAEAHRAIPRGYDPPANRQSVLAPSFRGRERAEFQPGLQPERRQTRPLTEARLFSLTPEGPHRLPQYYER* |
| Ga0075130_114748 | Ga0075130_1147482 | F067270 | MNLPPEFIEYLQDEIKHFDKELISILELPNVKSLRDRIKKDKRDTEEMLNLYYRMGKVNKLIKLVKSEMRKCNDRAMALLGHRLQRVTRKYDRHRDTSYDL* |
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