Sample 3300005926

Overview

Basic Information
IMG/M Taxon OID	3300005926 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114820 \| Gp0116319 \| Ga0075134
Sample Name	Saline lake microbial communities from Rauer Lake, Antarctica, in enrichment culture - Antartic Rauer Lake 3 Metagenome Rauer3
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	51172647
Sequencing Scaffolds	13
Novel Protein Genes	13
Associated Families	9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → unclassified Halorubrum → Halorubrum sp. BV1	1
All Organisms → Viruses → Predicted Viral	3
Not Available	6
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Saline Lake Microbial Communities From Various Lakes In Antarctica
Type	Environmental
Taxonomy	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake Enrichment → Saline Lake Microbial Communities From Various Lakes In Antarctica

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → saline lake → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Hypersaline (saline)

Location Information
Location	Rauer Lake, Antarctica
Coordinates	Lat. (^o)	-68.8244	Long. (^o)	77.8344	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F003128	Metagenome	506	Y
F006455	Metagenome	373	Y
F006730	Metagenome	366	Y
F011984	Metagenome	285	Y
F047394	Metagenome	150	N
F059487	Metagenome	134	Y
F070700	Metagenome	123	N
F072888	Metagenome	121	N
F084898	Metagenome	112	N

Family

Category

Number of Sequences

3D Structure?

F003128

Metagenome

506

F006455

Metagenome

373

F006730

Metagenome

366

F011984

Metagenome

285

F047394

Metagenome

150

F059487

Metagenome

134

F070700

Metagenome

123

F072888

Metagenome

121

F084898

Metagenome

112

Scaffold	Taxonomy	Length	IMG/M Link
Ga0075134_100962	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → unclassified Halorubrum → Halorubrum sp. BV1	8336	Open in IMG/M
Ga0075134_102132	All Organisms → Viruses → Predicted Viral	3915	Open in IMG/M
Ga0075134_102169	Not Available	3855	Open in IMG/M
Ga0075134_102377	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae	3497	Open in IMG/M
Ga0075134_104094	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	1948	Open in IMG/M
Ga0075134_104832	All Organisms → Viruses → Predicted Viral	1639	Open in IMG/M
Ga0075134_106056	All Organisms → Viruses → Predicted Viral	1279	Open in IMG/M
Ga0075134_107526	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum	1009	Open in IMG/M
Ga0075134_109463	Not Available	778	Open in IMG/M
Ga0075134_110912	Not Available	668	Open in IMG/M
Ga0075134_112178	Not Available	594	Open in IMG/M
Ga0075134_113181	Not Available	543	Open in IMG/M
Ga0075134_113595	Not Available	525	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0075134_100962

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → unclassified Halorubrum → Halorubrum sp. BV1

8336

Open in IMG/M

Ga0075134_102132

All Organisms → Viruses → Predicted Viral

3915

Open in IMG/M

Ga0075134_102169

Not Available

3855

Open in IMG/M

Ga0075134_102377

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae

3497

Open in IMG/M

Ga0075134_104094

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria

1948

Open in IMG/M

Ga0075134_104832

All Organisms → Viruses → Predicted Viral

1639

Open in IMG/M

Ga0075134_106056

All Organisms → Viruses → Predicted Viral

1279

Open in IMG/M

Ga0075134_107526

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum

1009

Open in IMG/M

Ga0075134_109463

Not Available

778

Open in IMG/M

Ga0075134_110912

Not Available

668

Open in IMG/M

Ga0075134_112178

Not Available

594

Open in IMG/M

Ga0075134_113181

Not Available

543

Open in IMG/M

Ga0075134_113595

Not Available

525

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0075134_100962	Ga0075134_1009627	F011984	MRPIICDCCQIRIDERWAGPALVVKVHNGVDTDVAGDHCVDCAGDISDAIRSVIDDNDRSDSNE*
Ga0075134_102132	Ga0075134_1021321	F084898	MSVQYKNSKFNRVTQNDIVSTLETIHGIGQDTAQDVVSLVDATEYEDLLNDARTDLKGNVKRALLTSQINRESVLAVVLYQAQKNDGESQEVILYKNGDSI*
Ga0075134_102169	Ga0075134_1021694	F006730	MARETTSLFDQRVYVQATPPQDTRDGIIWVDTSLADKPTKVYSADTQSFVAVGVADYSQLENRIIGTEVDEYMDGTLGQVESKGFQTPTNYASTDVTEYGVGDSGTFTDGLENYVGYFIDSYEYEIYISLDGSNPANLSFTPSGGLTGVNGLNIPTDPEDTITHSEENRKTVSLSDSANFDPIQVTESDPFSFSYDILANNVASYANATHTVEYTATFNVVTNIPHNHGFNYAN*
Ga0075134_102377	Ga0075134_1023773	F003128	MQIEVSASEIKPAKKADDRGRITLGSEFARETVTVAVLEVEDEDDVEEVST*
Ga0075134_104094	Ga0075134_1040942	F059487	MGDPQDFEPTNPIDRFVDRVVIRSDCPVEPCASDSWVKMRAVAVAYLITIPGLYMMNQGFESVGLIVAVSNMLIAINIMSTRFNQRIEHGHTCGRSVIDANNRSDSNE*
Ga0075134_104832	Ga0075134_1048325	F072888	MTFDVAIEREVNGDNELTDYENVSKAINIPSMAKIKLTYPDGETDMSPCGQIVSISEHEASDSEAN*
Ga0075134_106056	Ga0075134_1060563	F006455	MNQQVKPPAGWTEIEPEFEFQRQTFQRRRDGLVVSVEQELHAAYNVVKLPENYYQDNRVIGCIEVGVELEDAAESAREWMEQNNRQ*
Ga0075134_107526	Ga0075134_1075261	F003128	MQIEVSASEIKSSKKADDRGRVTLGSEFAGKTVTVAVLEVEDD*
Ga0075134_109463	Ga0075134_1094631	F003128	MQIGVSASEIKFEKKADDRGRVTLGSEHAGKTVTVAVLDVEGE*
Ga0075134_110912	Ga0075134_1109121	F070700	MMTQLTTADRFELVDAQYYNKVRSEYRDKTADGEIDLDDLEECVGETTEIVTDGGEIDDRTQHITDDDIEHGTDGGAIQDFNKVREALETFQRSAEETWSEHMDGIEQGHYWLVQETDDVIVLAADDELYKEYLSPTGHDTTDYHYAVSGVMHSIAKRLTGYNWGYSYPLVIAKPDDFDSGRRFVEAIINRYINEGLSP
Ga0075134_112178	Ga0075134_1121782	F003128	MQIDVSASDIKSEKMADNRGRVTLGSEYAGKTVTVAVLEVADE*
Ga0075134_113181	Ga0075134_1131811	F047394	MTANTQPTETRAQTTNGSFQTDVSELQETTEHAVEILDSHGAPVTISRLVGTVVQLGARDEYRFETIVRVAQQYIDEECGGADQ*
Ga0075134_113595	Ga0075134_1135951	F059487	MSDLGNCAPTNPIDRFVDRVVIRSACPVEPCASDSWVKMRAVAVAFLITIPGLYMINQGFESTGLIVATANMLIAINIISTRVNQRIEHGHTCGRSVIGTNNRSDSNE*

Scaffold ID

Protein ID

Family

Sequence

Ga0075134_100962

Ga0075134_1009627

F011984

MRPIICDCCQIRIDERWAGPALVVKVHNGVDTDVAGDHCVDCAGDISDAIRSVIDDNDRSDSNE*

Ga0075134_102132

Ga0075134_1021321

F084898

MSVQYKNSKFNRVTQNDIVSTLETIHGIGQDTAQDVVSLVDATEYEDLLNDARTDLKGNVKRALLTSQINRESVLAVVLYQAQKNDGESQEVILYKNGDSI*

Ga0075134_102169

Ga0075134_1021694

F006730

MARETTSLFDQRVYVQATPPQDTRDGIIWVDTSLADKPTKVYSADTQSFVAVGVADYSQLENRIIGTEVDEYMDGTLGQVESKGFQTPTNYASTDVTEYGVGDSGTFTDGLENYVGYFIDSYEYEIYISLDGSNPANLSFTPSGGLTGVNGLNIPTDPEDTITHSEENRKTVSLSDSANFDPIQVTESDPFSFSYDILANNVASYANATHTVEYTATFNVVTNIPHNHGFNYAN*

Ga0075134_102377

Ga0075134_1023773

F003128

MQIEVSASEIKPAKKADDRGRITLGSEFARETVTVAVLEVEDEDDVEEVST*

Ga0075134_104094

Ga0075134_1040942

F059487

MGDPQDFEPTNPIDRFVDRVVIRSDCPVEPCASDSWVKMRAVAVAYLITIPGLYMMNQGFESVGLIVAVSNMLIAINIMSTRFNQRIEHGHTCGRSVIDANNRSDSNE*

Ga0075134_104832

Ga0075134_1048325

F072888

MTFDVAIEREVNGDNELTDYENVSKAINIPSMAKIKLTYPDGETDMSPCGQIVSISEHEASDSEAN*

Ga0075134_106056

Ga0075134_1060563

F006455

MNQQVKPPAGWTEIEPEFEFQRQTFQRRRDGLVVSVEQELHAAYNVVKLPENYYQDNRVIGCIEVGVELEDAAESAREWMEQNNRQ*

Ga0075134_107526

Ga0075134_1075261

F003128

MQIEVSASEIKSSKKADDRGRVTLGSEFAGKTVTVAVLEVEDD*

Ga0075134_109463

Ga0075134_1094631

F003128

MQIGVSASEIKFEKKADDRGRVTLGSEHAGKTVTVAVLDVEGE*

Ga0075134_110912

Ga0075134_1109121

F070700

MMTQLTTADRFELVDAQYYNKVRSEYRDKTADGEIDLDDLEECVGETTEIVTDGGEIDDRTQHITDDDIEHGTDGGAIQDFNKVREALETFQRSAEETWSEHMDGIEQGHYWLVQETDDVIVLAADDELYKEYLSPTGHDTTDYHYAVSGVMHSIAKRLTGYNWGYSYPLVIAKPDDFDSGRRFVEAIINRYINEGLSP

Ga0075134_112178

Ga0075134_1121782

F003128

MQIDVSASDIKSEKMADNRGRVTLGSEYAGKTVTVAVLEVADE*

Ga0075134_113181

Ga0075134_1131811

F047394

MTANTQPTETRAQTTNGSFQTDVSELQETTEHAVEILDSHGAPVTISRLVGTVVQLGARDEYRFETIVRVAQQYIDEECGGADQ*

Ga0075134_113595

Ga0075134_1135951

F059487

MSDLGNCAPTNPIDRFVDRVVIRSACPVEPCASDSWVKMRAVAVAFLITIPGLYMINQGFESTGLIVATANMLIAINIISTRVNQRIEHGHTCGRSVIGTNNRSDSNE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300005926: Saline lake microbial communities from Rauer Lake, Antarctica, in enrichment culture - Antartic Rauer Lake 3 Metagenome Rauer3

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences