3300005923: Saline lake microbial communities from Deep Lake, Antarctica, in enrichment culture - Antarctic Deep Lake Metagenome VIRDL14

Overview

Basic Information

• IMG/M Taxon OID: 3300005923
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114820 | Gp0116314 | Ga0075129
• Sample Name: Saline lake microbial communities from Deep Lake, Antarctica, in enrichment culture - Antarctic Deep Lake Metagenome VIRDL14
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 10334105
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Haloferacalesvirus	1
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Saline Lake Microbial Communities From Various Lakes In Antarctica
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → saline lake → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Hypersaline (saline)

Location Information

• Location: Deep Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.5563
  • Long. (^o): 78.1877
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003128	Metagenome	506	Y
F068284	Metagenome	125	Y
F072888	Metagenome	121	N
F102170	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0075129_100557	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Haloferacalesvirus	2094
Ga0075129_100671	Not Available	1153
Ga0075129_100757	Not Available	792
Ga0075129_100843	Not Available	541

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0075129_100557	Ga0075129_1005571	F072888	DESRNVWDTTLFGDEQDEPLQPMTLDVAIEREVNGENELTEYENVSKVINIPSMGKIKLTYPDGETDMSPCGQIVSISEHEASDSEAN*
Ga0075129_100671	Ga0075129_1006711	F003128	MQIEVSASDIKSDKKADDRGRVTLGSEYAGKSVAVAVLEVKDEDDVRTDGG
Ga0075129_100757	Ga0075129_1007572	F068284	DTDCFTVEEIGEKAAERAAEIGRDYAPTDMFEPDEHYEIPTDSAKYSNDIAPQLQQLAGYAPYDSTPTDIGYHIHKEDVLPAFREAYHSEAINREM*
Ga0075129_100843	Ga0075129_1008431	F102170	GTGTASKRPGSTEGKSMSDDDETVIVMTKGRVYHTDETCKRITDRAREWDLDEALNDGRYECGHCQADENLGSKHHGEHLATKLSKADPDEVAPTEFDRERASVSLAWFVAVWLAIMAASTFTGVMLYFAGVLL*