3300005853: Archaeal communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter C (PS_C) MetaG (SPADES assembly)

Overview

Basic Information

• IMG/M Taxon OID: 3300005853
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0067861 | Gp0093347 | Ga0079997
• Sample Name: Archaeal communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter C (PS_C) MetaG (SPADES assembly)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 98624073
• Sequencing Scaffolds: 12
• Novel Protein Genes: 13
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → spring water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013155	Metagenome / Metatranscriptome	274	Y
F014385	Metagenome / Metatranscriptome	263	Y
F021443	Metagenome / Metatranscriptome	219	Y
F023604	Metagenome / Metatranscriptome	209	Y
F043237	Metagenome / Metatranscriptome	156	Y
F051572	Metagenome / Metatranscriptome	144	N
F068875	Metagenome / Metatranscriptome	124	N
F073601	Metagenome / Metatranscriptome	120	Y
F075398	Metagenome / Metatranscriptome	119	N
F081384	Metagenome / Metatranscriptome	114	N
F088087	Metagenome	109	N
F096328	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0079997_104853	Not Available	663
Ga0079997_107431	All Organisms → cellular organisms → Bacteria	866
Ga0079997_112814	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	821
Ga0079997_114834	All Organisms → cellular organisms → Bacteria	7369
Ga0079997_115348	All Organisms → cellular organisms → Bacteria	4067
Ga0079997_116028	All Organisms → cellular organisms → Bacteria	4701
Ga0079997_116987	All Organisms → cellular organisms → Bacteria	133099
Ga0079997_118483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus	3766
Ga0079997_118698	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	32260
Ga0079997_119642	Not Available	1112
Ga0079997_121850	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	2211
Ga0079997_127655	Not Available	554

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0079997_104853	Ga0079997_1048532	F043237	LEYDGFVFYLCRLPSKKEVVSYCLPRTEGAFKVYCLSSKPLEFPNAPLKLHYDEKSQRLRLLAQKSFINNCLNAIEKASSLTYPSPKLYTGHVNKLLRQLYGILAYTYNDRERLSAIKRKVKHWVVEALKSQYGLKPKDAMLDYSRYVLKFSDVLRKKKSVFRNL*
Ga0079997_107431	Ga0079997_1074311	F014385	MRRQNWMVECDWYELMQIIFVRSAMEQLAPEEERALWLYAEGARLPKRERQLAETAIAKVRRMLNLE*
Ga0079997_112814	Ga0079997_1128141	F013155	LAVTVWLLRLLIPVWQTLRKVVFALENYDFDKLAKEFLSNEKPLAETIDVKVSEKKEEGYRELTVTRVYRKPLDPREIQEGFVRQMAERLQ*
Ga0079997_114834	Ga0079997_1148346	F075398	MLRRLKSGRLTFGVSVGLLGMALMSTGYARVDKAPTFKTDPYPFVENLGQLADPEGRPLRDAYFTFEAPGMRGYVTRWG*
Ga0079997_115348	Ga0079997_1153481	F023604	MRLHFLAPYLLSLTMAMDIPVPKAAVKSRALEKAALKGMRPLAGVREEKPRQAYANETNFCKVKIDYISN*
Ga0079997_116028	Ga0079997_1160283	F073601	VSLALGRAMLQAKATCLVMVLPAKRREGQRMFGLLHIAWRCAVKIMECGRIIRTLPVEKKALAGMGVLLQQG*
Ga0079997_116987	Ga0079997_11698772	F088087	LKASDGSVWLPVTVSSAPCEICRRKSKSVVYECTEGKWAGVRVVACPEHAERAIERFIAGGDE*
Ga0079997_118483	Ga0079997_1184834	F096328	MTEAAYFWSKEAEKILAPYVQHLVGAEEPPEISSPLFAMPWDYSFNGLRVDLKLACKARSYRRISHRTLTDIRKSLESGVMVALFIPPHLYLLYPWGAIWDGSLEFLYTCPSILIPESVVQKVCEIYNRMVL*
Ga0079997_118698	Ga0079997_11869814	F068875	VVSLSDMAIQCRCGQPIEAFGVPSCYTKMAPIVRLIFTTKANQLITDPATQLELSPANSTFPDIYRLITPRLDEVTSERPEAITEEIGATTYYVRDAARTITATVGQIPTEWAQRVAELRCQAEVGVFLIDANGTIWGRKVDTQTGVAGAPLPVVPSSVDVRFAFPSYTSVQKHIISFQLPFVLADYEIIPLWNNREVLNYLAPQPVGFRVFEDGGTWVVFLFSKYHSPEGTIVVPIANVVVPSEIEIYDSTGTTLVATGASNLGGGKYSLTSSLTSGTQYILDCTAVSSPPRSQFDWPAIRVPFRA*
Ga0079997_118698	Ga0079997_11869818	F081384	MLITPSDFGGDYRLFNANNLDPDTIQAIDQAQAELARDLFPVGHSFITGNLPSAPPNLGLRALGLHNLFVPWVFLRLELGILGAGVKRASDVPGRSRFASGAFFAIARQYRYFLDDWLPYEGYIEGIASSPTVLNIPIIASQILAPGMEIEINSERYSVVASSTGLLTIDPPLPLGTGNVRFRQLSLRVNRKWNYL*
Ga0079997_119642	Ga0079997_1196421	F021443	MKCLFNSGKLTFMFRSSYVTFYNYVYSYYQTNEILSFAIMDLVFKIINQQERKSIILKKRKPIIHLLNYIDILNFNSNSNKFEITFSLKNKYKTPLIYNLYLYRSLYRRRYYKDFYKDSLEVIERENLCIIRADDDYASRIQPKNLNLATMLMYILERKEIDMIDVNGIIFYCVFLM*
Ga0079997_121850	Ga0079997_1218502	F013155	MELYQVVVIAIALNLAVTVWLLKLLLPLWQYLKKVVFVVDEYDFNRLINQFLNGEKPISETIHIKTTENKDEGYKEIIITRAYKKPLDPREIQEGFVRQMAEKLQ*
Ga0079997_127655	Ga0079997_1276552	F051572	MTSRTHSGPFAEVRTFADVVLEGGCKKSLQFLNAYFDLCVLAVLIKATPASPMVKLRPEIVRRLVEEVAAAVGGGDRERIRNAMLKRAGEMMAQLRRELGDSAPSEAYVAKLAELFL