3300005852: Thermal spring microbial communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter B (PS_B) MetaG (SPADES assembly)

Overview

Basic Information

• IMG/M Taxon OID: 3300005852
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0067861 | Gp0093346 | Ga0079998
• Sample Name: Thermal spring microbial communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter B (PS_B) MetaG (SPADES assembly)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 85136290
• Sequencing Scaffolds: 15
• Novel Protein Genes: 20
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	6
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	1
Not Available	4
All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Thermocrinis → Thermocrinis ruber	1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → Pyrobaculum ferrireducens	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → spring water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013155	Metagenome / Metatranscriptome	274	Y
F021443	Metagenome / Metatranscriptome	219	Y
F023604	Metagenome / Metatranscriptome	209	Y
F028182	Metagenome / Metatranscriptome	192	N
F038745	Metagenome / Metatranscriptome	165	Y
F043237	Metagenome / Metatranscriptome	156	Y
F051572	Metagenome / Metatranscriptome	144	N
F067776	Metagenome / Metatranscriptome	125	N
F069506	Metagenome	124	N
F075483	Metagenome / Metatranscriptome	119	Y
F075803	Metagenome / Metatranscriptome	118	Y
F088087	Metagenome	109	N
F092976	Metagenome	106	Y
F096328	Metagenome	104	Y
F104114	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0079998_101732	All Organisms → cellular organisms → Bacteria	43231
Ga0079998_106325	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	1959
Ga0079998_107827	Not Available	591
Ga0079998_108348	All Organisms → cellular organisms → Bacteria	3886
Ga0079998_109173	All Organisms → cellular organisms → Bacteria	15800
Ga0079998_113033	Not Available	2904
Ga0079998_115906	All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Thermocrinis → Thermocrinis ruber	10441
Ga0079998_116039	All Organisms → cellular organisms → Bacteria	10115
Ga0079998_116177	Not Available	733
Ga0079998_117057	All Organisms → cellular organisms → Bacteria	37497
Ga0079998_119667	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → Pyrobaculum ferrireducens	7849
Ga0079998_122483	Not Available	540
Ga0079998_122652	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → Pyrobaculum ferrireducens	3699
Ga0079998_129701	All Organisms → cellular organisms → Bacteria	27665
Ga0079998_130334	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → Pyrobaculum ferrireducens	9171

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0079998_101732	Ga0079998_10173236	F075803	MTSLKALSASPSPAFMRFRTSASEVPNATLWPFLHNLHKPPLHKKLHFRRIPKKAFAIGGFDTTSPRMTLLRSLLEIFWNQGAALERRSTPSTPKGATFLFVYSYITPHGACRFWFAAHLRLHPVLESRVFIEPSLGEPHPYLICGSTLGTFPILNPEKEPTLPKCSFNSTPPEKNQKGYAYA*
Ga0079998_106325	Ga0079998_1063251	F075483	MIELLAVQAVTTLALAFFVIKLRRELWPMFAVAKSGEVGFWVRSADVLGVVMPQFEASKVVIKVRWLFSEEIHMTYSFRVYDVAMHPLRRHHYVRWKAWMSGDDRYRCEVEKPRGLSRLYNKAIDVFCKEKEPPKEVVILPSRWRKRRYKQFK*
Ga0079998_106325	Ga0079998_1063252	F013155	MELYQMVVIVIALANLAVTIWLLRLLIPIWQTLRKVVFALDHYDFDKLAKQFLSNEKPLAENVIVKTSEKKEEGYREISITRVYKKPLDAKEVWEGIVRQMAEKLQ*
Ga0079998_107827	Ga0079998_1078271	F051572	VHFLTPRLDLCVLAALVKAAPAGSMVRLRPEIVRRLVEELAAAAGQNRERIRNVLLKKAGETLAQLRRELGDKTPAEALLAKLAELFLKELKA*
Ga0079998_108348	Ga0079998_1083483	F104114	MERLRLWLSLTQDEKFAAAEKELKDAVVARYDEFADEWSLVRGVEDIAPSALAESVIQTVEALLGLQWRLEWDYDADADDMELDSGATTYWFKVSDPETGYVLTHKTSGMTGERLRYFKLIETLRDAVQAVVDLADIIAEKLPVVRSQVSLIKEVK*
Ga0079998_108348	Ga0079998_1083488	F069506	MQSEQLTYTEEQIKQAIEEVWQELLQEADAEDYSLEEYLEDYRKYWDDPDFPNDVPELIMRTVEKIVGRPLSWYCELVRDPAGFTGEYSFVVVDPKTQKCLTYREYTFDGVNVHRFINVAGTVVNYEDIIRLVIKLLDQIQSALANA*
Ga0079998_109173	Ga0079998_10917313	F088087	VLKASDGSVWLPVTVSSAPCEICRRKSKSVVYECTEGKWAGVRVVACPEHAERAIERFIAGGDE*
Ga0079998_113033	Ga0079998_1130331	F067776	MALMSLGYARVDKAPTFKTDPYPFVENLGQLADPEGRPLRDAYFSFEAPGMRGYVTRWG*
Ga0079998_115906	Ga0079998_11590610	F043237	MDLEKTARYIAQLSRHGYKYAIIGKLVRYDRELVKRLEYDGFVFYLCRLPSKKEVVSYCLPRTEGPFKVYCLSSKPLEFPNAPLKLHYDEKSQRLRLLAQKSFINDCLNAIEKASEVKYPSPKLYIAQVKKLLRQLYGILAYTYNDRERLSAIKRKVKHWVVEALKNQYGLKPK
Ga0079998_115906	Ga0079998_1159066	F043237	MDLEKTARYIAQLSRHGYKYAVLGELSNYNRELVKRIDLEGFVFYLCRLQTKKEVISYCLQKADKPFKVYCLSSKPLEIPHMPLKLHYDEKTGRLRLLAQKSFINACLNAIEKASEVKYPSPKLYIAQVNKALRQLYGILAYTYNDRERLSAIKRKVKHWVVEALKNQYGLKPKDAMLDYSRYVLKFSDVLRKKKSASVASATEGGRGRG*
Ga0079998_116039	Ga0079998_1160391	F028182	MPKVSISEAARRLDTTEEVIREWIRLGLLDVEPPPAKPRRTRELNLAFQPTSAVPEPKVDLEQLYEVAEREGWLLLSLEAWDAADSEP*
Ga0079998_116177	Ga0079998_1161772	F021443	TFYNYVYSYYQTNEILSFAIMDLVFKIINQQKRKSIILKKRKPIIHLLNYIDILNFNSNSSKFNIDFRLGNKYKTPLIYNLYLHRSSHRRSYYASFYKDSLNVIERENLCIIKLEDDYASRIQPKNVNLIAMLMHMLEQKEIDMIDVNGIIFYCVFLM*
Ga0079998_117057	Ga0079998_11705720	F023604	MAMDISVPKAAVKSRAVEKADLKGMRPPAGEEDKPWQAYANETNFCKVKIDYISN*
Ga0079998_119667	Ga0079998_11966710	F075483	MIELLAVQAVTTLALAFFVIKLRRELYPMIATAGPVHAGFWIRSIDVMVLAAPQLEVAKTVIKIRRLLEEELFLKYSLKFYDVAMHPTSQHHYRMWKAWMQGDDRYKCEVEKPRGLSRLYNKAVEVFCREKEPPKEVIILPSKVRKRRYKRMLRQLREARRNSAEKPT*
Ga0079998_119667	Ga0079998_1196679	F013155	VAVIAIALANLAVTVWLLRLLIPVWQTLRKIVFVLDQYDFDKLAKEFLSNEKPLAETIDVKVSEKKEEGYRELTVTRVYRKPLDPREIQEGFVRQMAERLQ*
Ga0079998_122483	Ga0079998_1224832	F096328	MTEAAYFWSKEAETILAPYVQALVGAEEPPEISSPLFAMPWDYSFNGLRVDLKLACKARSYRRISHRTLTDIRKSLESGVMVALFIPPHLYLLYPWGAIWDGSLEFLYTCPSILIPESVVQKVCEIYNRMVL*
Ga0079998_122652	Ga0079998_1226523	F038745	MAVCGKLMQISLTFSAYYPLCLDGPSCAYAEAVERLIRRAASARDAEELLEVMEGRVKLEELGLPAPALKALAEELGPEPRWLDALAASFFRLYLGVYRRRRVDGRDVFLALCFWAQKKRREDPWNPLWRAAELKPDRLYTEEEAREALKINEALFRRLWRRALAGDKAYGFQLILAALSLMAAPPRSV*
Ga0079998_122652	Ga0079998_1226524	F051572	MTSRTHSGPFAEVRTFADVVLEGGCKKFLQFLNAYFDLCVLAVLIKATPAGPMVRLRPEIVRRLVEEVAAAVGGGDRERIRNAMLKRAGEMMAQLRRELGDSAPSEAYVAKLAELFLKKLEA*
Ga0079998_129701	Ga0079998_12970132	F092976	MMVQEILHWKQELRRVRQEFLQIWRECPKCGANWADISWDAESDHEFLLVECKGHHLFRADEEFWLYDCDGMGVYVPSEDCEAEVSAYAG*
Ga0079998_130334	Ga0079998_1303343	F013155	MELYQVAVVVIALANLAVTVWLLRLLIPVWQTLRKVVFVLDQYDFDKLAKEFLSNEKPVAETIDIKVSEKQEEGYKELTVTRVYKKPLDPREIQENFVRQMAERLQ*