NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300005851

3300005851: Thermal spring microbial communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter A (PS_A) MetaG (SPADES assembly)



Overview

Basic Information
IMG/M Taxon OID3300005851 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0067861 | Gp0093345 | Ga0079996
Sample NameThermal spring microbial communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter A (PS_A) MetaG (SPADES assembly)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size73012051
Sequencing Scaffolds12
Novel Protein Genes18
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available6
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → Pyrobaculum ferrireducens1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSaline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biomehot springspring water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013155Metagenome / Metatranscriptome274Y
F021443Metagenome / Metatranscriptome219Y
F038745Metagenome / Metatranscriptome165Y
F051572Metagenome / Metatranscriptome144N
F069506Metagenome124N
F104114Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0079996_102180Not Available38282Open in IMG/M
Ga0079996_102570All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → Pyrobaculum ferrireducens5883Open in IMG/M
Ga0079996_103386Not Available3830Open in IMG/M
Ga0079996_104496All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.1374Open in IMG/M
Ga0079996_105440Not Available1344Open in IMG/M
Ga0079996_109425Not Available664Open in IMG/M
Ga0079996_110067All Organisms → cellular organisms → Bacteria7444Open in IMG/M
Ga0079996_110700Not Available3287Open in IMG/M
Ga0079996_112244All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum21006Open in IMG/M
Ga0079996_113383All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum2896Open in IMG/M
Ga0079996_117060Not Available712Open in IMG/M
Ga0079996_134771All Organisms → cellular organisms → Bacteria7696Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0079996_102180Ga0079996_10218037F021443MRYLLNDERLTFTFTSSYVECHNYVYGYYQINEILSFAVIDLVFKIINQQKRKSIVLKKRKSIIHLLNYIDILNFNSNSSKFEITFPLENEYESSLIFNLFLYRRRYNDLHKNNLKVIEHKNSCIIRLKYDGSDIIQPKNVNLATMLMRILKKEEIDMIDPNGMIFYCIFLM*
Ga0079996_102570Ga0079996_1025705F051572MTSRTHSGPFAEVRTFADIVLEGGCKKSLQFLNAYFDLCVLAVLIKAAPAGPMVRLRPEIVRRLVEEVAAAVGGGDRERIRNAMLKRAGEMMAQLRRELGDSAPSEAYVAKLAELFLKKLEA*
Ga0079996_102570Ga0079996_1025706F038745MDKAVMAVCGELMQISLTFSAYYPLCLDGPSCAYAEAVERLIRRAASARDAEELIKVMEGRVKLEELSLPPPALKALAEELGPEPRWLDALAASFFRLYLGVYRRRRVDGRDVFLALCFWAQKKHREDPWNPLWRAAELKPDRLYTEEEAREALKINEALFRRLWRRALAGDKAYGFQLILAALSLMAAPPRSV*
Ga0079996_103386Ga0079996_1033861F104114CIMERLRLWLSLTQDEKFAAAEKELKDAIVARYDEFADEWFLSRSVEDIAPSALADSIIQAVEALLGLQWRLEWDYDADADDMELDSGATTYWFKVSDPETGYVLTHKTSGMTGERLRYFKLIETFRDAVQAVVDLADIIAEKLPVVRSQVSLIKGGEVRWHTG*
Ga0079996_104496Ga0079996_1044961F013155MELYQMAVIAIALANLAVTVWLLRLLIPVWQTLRKVVFVLDQYDFDKLVQQFLSNEKPVAETIDVKVSEKKEEGYRELTVTRVYKKPLDPREIQENFVRQMAEKLQ*
Ga0079996_105440Ga0079996_1054401F021443MKYLLDDERLTFRFGPSYVTCYNYDYSYQINGILSFAIIDLVFKIINQQKRKSIVLKKRKPIIHLLNYIDTLNFNSNSSKFNITFRLENKYKTPLIYNLYLHRSSHRRSYYASFYKDSLSVIERENLCIIKLEDDYPSRIQPKNVNLATMLIHILEQKEIDMIDANGIIFYCVFLM*
Ga0079996_105440Ga0079996_1054402F021443MKCMLNNEKLTFKFAHPYPPYVTCYNYDYSYYQINGILSFAVIDLVFKIVNQQERKSIILKKRKPIIHLLNYIDILNFNSNSNKLDITFPLENEYEPLLIYNLYLHRGLHRERYYKDLHKNNLKVIEHKNLCIIKLEYDCSTRIQPKNVNLATMLIHILEQKEIDTDLNGIIFYCIFLM*
Ga0079996_109425Ga0079996_1094252F021443MKCLLNSGKLTLIFSDPYLIDYVTCCNYDYNYYQTNGILSFAIMDLVFKIVSQEKVKSIILKKRKPIIHLLNYIDILNFNSNSNKLDITFSLKNKYKVQLIYNLYLYRSSHRERYYKNLYKNNLKVIERENLCIIELDDDYASRIQPKNVNLVTMLTHT
Ga0079996_110067Ga0079996_1100674F038745MDKAVMAVCGELMQISLTFSAYYPLCLDGPSCAYAEAVERLIRRAASARDAEELIKVMEGRVKLEELGLPAPALKALAEELGPEPRWHDALAASFFRLYLGVYRRRRVDGRDVALALCLWAQKKRLEDPWNPLWRAAELKPDKLYTEEEARKALAINEALFRRLWRRALAGDKAYGFQLILAALSLMAAPPRSV*
Ga0079996_110067Ga0079996_1100675F051572VRTFADVVLEGGCKKSLQFLNTHFDLCVLTVLIKTAPAGPMVKLRPEMVRRLVEEVAAAVGGGDRERIRNAMLKRAGEMMAQLRRELGDSAPSEAYVAKLAELFLKKLEA*
Ga0079996_110700Ga0079996_1107002F021443MKCLLNDERLTFRFAHPYPPYVNYNDSYYQINEILSFAVIDLVFKIINQQKRKKSIILKKRKPIIHLLNYIDILNFGSNSNKFEITFPLENEYKVLLIFNLYLYRSSHQERYYKDFYKDRLEVIERENLCIIKLEDDYVNIIQPKNLNLVAMLMHILTKEEIDMLEGDGTIFYCIFLI*
Ga0079996_110700Ga0079996_1107003F021443MKCMLNNKKLTFEFGHPYPPYVTCNNDSYYQINEILSFAVIDLAFKIISQQERKSIVLKKRKSIIHLLNYIDILNFNSNKFEITFPLENKYKALLMYNLFLYRSSHQERYYKDLYKNNLKVIENKNSCIIELKYDYSSRIQPKNVNLTTMLMRILAKKEIDTDLNGIIFYCVFLM*
Ga0079996_110700Ga0079996_1107004F021443MKCLLNDERLTFRFGHSYVTCYNYDNSYYQINEILSFAIIDLVFKIVNQQKRKSIVLKKRKSIIHLLNYIDMLNFNSNCSKFNITLRLENKYKTPLTYNLYLHRSSHRRSYYASFYKDSLSVIERENLCIIKLEDDYPNSIQPKNVNLATMLMHILEKEEIDMIDANGIIFYCVFLM*
Ga0079996_112244Ga0079996_1122444F038745MDKAVVVVCGELMQISLAFSAYYPLCSGGQPCAFAEAVERLIRRAASARGAEELLEAINGRVRLEGLGLPDPALEVLAEELGSEPRWLDALAASFFRLYLGLGRRRRVDGRDLAFALCLWAQKKRREDPRDPLWRAAELEPDRLYTEEEARKALEINEAFFRRLWRRALVFHRGEKAYGFQLILAALSLMAAPPRSA*
Ga0079996_112244Ga0079996_1122445F051572MSRGRAYGGPFAEVWEFADVVLKGGCKKSPQFLDAHLELCVLAALVKAAPAGSMVRLRPEIVRRLVEELAAAAGRDRERIRNALLKKAGETLAQLRRELGDKAPAEALLAKLVELFLKELEA*
Ga0079996_113383Ga0079996_1133832F013155MELYQVITVVIAIINLAVTVWLLKLLLPLWQYLKKVVFVVDEYDFNRLINQFLNGEKPISETIHIKTTENKDEGYKEIIITRAYKRPLDPREIQENFVRQMAEKLQ*
Ga0079996_117060Ga0079996_1170601F021443MKCTLNNKKLIFKFAYPHYPYVTCYNDNCYQINEILSFAVIDLVFKIMIQQERKSIVLKKRKPIIHLLNYIDVLNFNSNSSKLDIDFPLENEYKLQLIYKLYSYRNSHQERYYKYLCKNNLKVIESENLCIIGLEYDSISTIQPKNVNLTAMLMSILEKKEIDTDLNGIIFYCVFLM*
Ga0079996_134771Ga0079996_13477116F069506MQLAQVPYTEEQIKQAIEEVWQELLQEADAENYSLEEYLEDYRKYWDDPEFPNDIPELIMRTVEKIVGRPLSWYCELVRDPAGFTGEYSFVVVDPKTQKCLTYREHTFDGVNVHRFINVAGTVVNYEDIVRLVTKLLNQIQSALTAA*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.