3300005808: Basalt sediment microbial communities from the East Pacific Rise Rocks

Overview

Basic Information

• IMG/M Taxon OID: 3300005808
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110099 | Gp0072822 | Ga0079972
• Sample Name: Basalt sediment microbial communities from the East Pacific Rise Rocks
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 5626904
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Basalt Sediment Microbial Communities From The East Pacific Rise
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Benthic → Basalt Sediment → Basalt Sediment Microbial Communities From The East Pacific Rise

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): ocean biome → marine benthic feature → basalt
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: East Pacific Rise
• Coordinates
  • Lat. (^o): 9.725
  • Long. (^o): -104.16
  • Alt. (m): N/A
  • Depth (m): 2674

Associated Families

Family	Category	Number of Sequences	3D Structure?
F092086	Metagenome	107	Y
F093890	Metagenome / Metatranscriptome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0079972_13325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	623
Ga0079972_13527	Not Available	622

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0079972_13325	Ga0079972_133251	F092086	IALSACSGADDVLENVGDVSVPDQLTGCVERNKDGETCDKAACVADDESDCKSWVKACKKFDHVADVRNGIDTCERKEVSPDS*
Ga0079972_13527	Ga0079972_135271	F093890	VRPRLRFFLFLLSWILSISLFSTVLWANPTFLNRQAYPLPLGLHEIGQFHNNDLKTFEVWTQWSNPSNEKXVVKVTXSFYDKDSADSQLGEDGKDDLLMTVTESVTIPEQTSNWGKYFQLTAIGHKLNQGFDHPGEGAGLELYLDAQVISVKHLP