3300005796: Subglacial sediment microbial community from Lake Whillans, Antarctica - at 14-16 cm depth

Overview

Basic Information

• IMG/M Taxon OID: 3300005796
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0112339 | Gp0119885 | Ga0079492
• Sample Name: Subglacial sediment microbial community from Lake Whillans, Antarctica - at 14-16 cm depth
• Sequencing Status: Permanent Draft
• Sequencing Center: Marine Biological Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 29255309
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Subglacial Freshwater Microbial Communities From Lake Whillans, Antarctica
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Subglacial Freshwater Microbial Communities From Lake Whillans, Antarctica

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → subglacial lake → lake sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: West Antarctica
• Coordinates
  • Lat. (^o): -84.24
  • Long. (^o): -153.694
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027521	Metagenome / Metatranscriptome	194	Y
F041287	Metagenome / Metatranscriptome	160	Y
F045206	Metagenome / Metatranscriptome	153	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0079492_100331	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	6078
Ga0079492_111622	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	847
Ga0079492_116716	All Organisms → cellular organisms → Bacteria	683

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0079492_100331	Ga0079492_1003317	F041287	MEVCFKCRNQADFICPDCGTKVCIAHAELRYSGPHRGLKSRYMCPICWKMKRVVLNESMLNAREYKPKLYVFSSRKIGI*
Ga0079492_111622	Ga0079492_1116221	F045206	PGDELDEVRIVEVIVRGPGMSKAARSPLGVAMPKSPTKPQTPNKG*
Ga0079492_116716	Ga0079492_1167162	F027521	MNTKLLDIMVWLLFLGGVFGFVMGMLKFFGDGTPAEIGVMGIGGGFYLLSSAIIIYIRNQVKTD*