3300005784: Deep-sea sediment bacterial and archaeal communities from Fram Strait - Hausgarten IV

Overview

Basic Information

• IMG/M Taxon OID: 3300005784
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114881 | Gp0119453 | Ga0078431
• Sample Name: Deep-sea sediment bacterial and archaeal communities from Fram Strait - Hausgarten IV
• Sequencing Status: Permanent Draft
• Sequencing Center: Center for Biotechnology (CeBiTec), Bielefeld Univeristy
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 37547260
• Sequencing Scaffolds: 19
• Novel Protein Genes: 20
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	3
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Candidatus Nitrosopumilus sp. SW	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius sp. associated proteobacterium Delta 1	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → environmental samples → uncultured Woeseiaceae bacterium	3
Not Available	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium → unclassified Lichenibacterium → Lichenibacterium sp. 6Y81	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatirhabdium → Desulfatirhabdium butyrativorans	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep-Sea Sediment Bacterial And Archaeal Communities
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Sediment → Deep-Sea Sediment Bacterial And Archaeal Communities

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine benthic biome → marine benthic feature → deep marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: Fram Strait
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000352	Metagenome / Metatranscriptome	1247	Y
F005817	Metagenome / Metatranscriptome	389	N
F013096	Metagenome / Metatranscriptome	274	Y
F013764	Metagenome	268	Y
F035454	Metagenome	172	Y
F062779	Metagenome	130	Y
F071263	Metagenome	122	Y
F074900	Metagenome	119	Y
F081360	Metagenome	114	Y
F082716	Metagenome	113	Y
F087217	Metagenome	110	Y
F087249	Metagenome / Metatranscriptome	110	Y
F092086	Metagenome	107	Y
F093897	Metagenome	106	Y
F102416	Metagenome	101	N
F103292	Metagenome	101	Y
F105217	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0078431_100020	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	10733
Ga0078431_100060	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	8023
Ga0078431_100320	All Organisms → cellular organisms → Archaea	3895
Ga0078431_100425	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	3483
Ga0078431_100500	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Candidatus Nitrosopumilus sp. SW	3207
Ga0078431_100689	All Organisms → Viruses → Predicted Viral	2830
Ga0078431_100981	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	2486
Ga0078431_101142	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2352
Ga0078431_104172	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius sp. associated proteobacterium Delta 1	1414
Ga0078431_104215	All Organisms → cellular organisms → Bacteria	1408
Ga0078431_104522	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → environmental samples → uncultured Woeseiaceae bacterium	1365
Ga0078431_104617	Not Available	1353
Ga0078431_105503	All Organisms → cellular organisms → Bacteria → Proteobacteria	1257
Ga0078431_109487	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	1001
Ga0078431_112577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → environmental samples → uncultured Woeseiaceae bacterium	885
Ga0078431_119234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → environmental samples → uncultured Woeseiaceae bacterium	724
Ga0078431_123084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium → unclassified Lichenibacterium → Lichenibacterium sp. 6Y81	663
Ga0078431_130441	All Organisms → cellular organisms → Bacteria	575
Ga0078431_134999	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatirhabdium → Desulfatirhabdium butyrativorans	533

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0078431_100020	Ga0078431_1000202	F093897	VKPGFYISMGIAITGLVVGFVLLYDIQQEKEVQNIWIQKIPTQCNDVWDEEYNEFYEINPEMRDATKEESKEFVEGIIKNHYEKHGINILDLSLELNVYEGARCEACNCLGWDRLSIKIPENELDLISDSEGWEPKG*
Ga0078431_100060	Ga0078431_10006011	F105217	MESGLNTNKERNLLIDSIQYRIFYSEINLDKIPTSISLDVFPNDKISAEIVIDGFLFYANGSLDLVFAEINKKLSLGLAPNQINPSDIFHALEEKNTNEAMAMIEEFQKYFQKPIHEEKIISDQEFNDGLNRYGYDIIGFHAEYENRNQVKYQHFWNRASSRLWEIRNQQKLESYDSLLKNAGTIGKDKPRNYLRVKLVDDDHPAIFWDSAHYENPKRYFTNILYLVKQFIDKILEILKPLYPLDSNLVSESRS*
Ga0078431_100320	Ga0078431_1003201	F082716	MPFTFIIAPILLVALTSVVAITYGEMIEEKELIVTLSCPDLKEYTENQLIESKLYFGHEVYLNYAKELYRDFC*
Ga0078431_100425	Ga0078431_1004257	F102416	MGELATNEDITMGENDWGMISKNPPMYESGADNAVIEVTDTENKVHKITFKKGGVLNLGRQGNTVYLAWDDSDTV*
Ga0078431_100500	Ga0078431_1005004	F013764	MMSAPSFLFFRTNSKTELNSSDLPPYTKRAFVAILVAIPMVFGLNMPLSSMATFVPVWGIIMINAIIIPSYMTFIIPKASKLLSSWLSSSSTKTNGVN*
Ga0078431_100689	Ga0078431_10068910	F000352	MRNIKLTESDCTFVHYVLRMYAQQTPGMDADDKAEIREVAAKFK*
Ga0078431_100689	Ga0078431_1006895	F005817	MRSNLLSRLKPEFKQGLEDNKTRYPASIHDLEFVLSQITFYNDLTVNQVLNLFLFSDMQYLDRKNFDWRYGEDAFELENNVA*
Ga0078431_100981	Ga0078431_1009811	F013096	MTRMSTDTGGDNAVGLSTLCQTNTVAVNVPAESDIQDNAGLNDCPGDSEPVIHASETVTP
Ga0078431_101142	Ga0078431_1011423	F087249	MQDTDELTTEAIRERMDAHIAAASESAEIDPANIGLIDDLAAKFLDSLTPKEMGFLMYDNPQPLSLQEVDSDIREKYRAKYGTKNLKRGQFFRLGSGTITFFTHEHNLKFKVDN*
Ga0078431_104172	Ga0078431_1041722	F081360	MGFLLLLAVVALGTIAWLLFRIDAKLQAIGDMIHDASKPEEQRRLTD*
Ga0078431_104215	Ga0078431_1042151	F092086	MNRYVLLLLTVMALSACSGADDVLENIGDVSVPDQLTGCVARNEDGETCDKAACVADDESDCKSWVKACEKYGHIADVRNGIDTCERKEVSPDS*
Ga0078431_104522	Ga0078431_1045223	F074900	MAAKIVNLANPDVGETLCASVEDAEQALAAMVEKFKSQGYRIDEQRLPDEDYPQYKVIDFDDAWVGTYTIILE*
Ga0078431_104617	Ga0078431_1046173	F062779	MITVSEMEDFNAAILQAGFEVDDFSIVDVEDDELPLKDDESTVIVQNGITGTVTVHRISTDAAITYSAGRLSTWVSEFEIDLHEGKFDQP*
Ga0078431_105503	Ga0078431_1055032	F071263	MDRIRDLCDLARDVDESLESLIRFGALGELTIYVIAHGWSGRSKDGTEDTLKVPVFLLAEDLHQSLNAQVTRVTQVRRPSDDEVVTLDEPVDVPRGDHYVSAEEAERFSREHALTLKSGSETPSYLNTNHDFHSTELATAVRAWMALFADGSFDPGSKTTRQRIELWLRARKPNLKPNAEQRIASLVNPDPAKGGGAARTPNK*
Ga0078431_109487	Ga0078431_1094871	F082716	MIHKKDIKLMPFTFIIAPILLVSLTIVVVTTYGDMIEEKELITSLSCPELKTYTQNQIIESKLYFGHDVYLNYAKELY
Ga0078431_112577	Ga0078431_1125772	F103292	MNLTWRFETQVPYGRLIAVVSEDGDEFSAEIEGDFFTTPRAKDSLIRDRIITDQHYGPESVYAQSLEALRQAIEEKIENDIGPVNKWTAGPG*
Ga0078431_119234	Ga0078431_1192342	F103292	MNLRWRFETQLPYGRFVAVVSEDGDGFSAEIEGKFVASPRTEDARIRDRKITDQHYGPESVRAHSLEALRHAVEENIENHIGPVDKRTADPG*
Ga0078431_123084	Ga0078431_1230842	F035454	RHDGAIGDDMSKSAKQTDMIDVVGKAIATSDGGRFGADRARYRRLAVAAIRPLAKPTEAMVDAAYEAVWFDAYWAINNRRDFKRAMKAMIAKATGGVPD*
Ga0078431_130441	Ga0078431_1304411	F087217	MLRMSSVFIAVASLAIAFLAVPSPGHAAGLPEGVSIELLAEYSSKTPGVEKVLFRKITMKPGATISFTEPSQSLCQGTKGELEVVDHTTGKTIIHKAGDRWDTTPGHDVTLTNKGAVDHEHLFYSLVVKK*
Ga0078431_134999	Ga0078431_1349991	F087217	MMRFSSALIAAASLAFAFLVMPGAGHAAELPEGVTIDLIAEYPSKTAGIEKVLFRKIALKPGASWSFTVPAQSLCQAIKGELEVEDHTAGKTVVFKAGDRWDTSPGHEVTLSNKGTVDHEHLFYTL