3300005757: Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS872

Overview

Basic Information

• IMG/M Taxon OID: 3300005757
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114926 | Gp0118638 | Ga0078058
• Sample Name: Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS872
• Sequencing Status: Permanent Draft
• Sequencing Center: Marine Biological Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 29132078
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Community Analysis Of Hydrothermal Vent Diffuse Flow Samples From Mid-Cayman Rise, Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Deep Sea Hydrothermal Vent Diffuse Flow → Microbial Community Analysis Of Hydrothermal Vent Diffuse Flow Samples From Mid-Cayman Rise, Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal vent → hydrothermal fluid
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Mid-Cayman Rise
• Coordinates
  • Lat. (^o): 18.375
  • Long. (^o): -81.797
  • Alt. (m): N/A
  • Depth (m): 2372

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013484	Metagenome / Metatranscriptome	271	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0078058_101141	Not Available	2432
Ga0078058_109320	Not Available	1609

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0078058_101141	Ga0078058_1011412	F013484	MDVRFHFPDGTLSTEHQALVEALNRFLAVLPDDEDQEVVVRLVMELLELADVASQGEIARAAGYSERTLRFYKRRLHDEGLGGLFDHPIPGRPAVSTQPAVEGAVVQAIVEAIITQHTLPDDAALAEAVNHHLADKKDPSAGQVTTSMVETIRLGWGIKRLPVRQQLQDAQTSPAPQQEMVHLGRTRVGGAFILAVLLVEEGLLRFAHLLSMAPGYAVTSVQWLLTAIFSVICGVERAFHLDDVRDIGFALLTGRPRPLSHSTFQHLLHAIASWDAIRFYLATARQAVRKVGEGTRRISLDGHVLPRHTKLVELAKGRIASTGRVLKAEELISAFDLDAGSFLALRVRQGGKNPTHVLLALVKELCMHRRGLEGLLRLFFDRGSYKGFIFEALSKLDNVHFYTPAVRYPTNVEQWEALTEEDFEPDPFVFDKHADLLPEEQPRFRLADITMEINIWEGKRLTGTVEVRAIVVHDPQGQTPKERWPFVLLTDDRDTPARELANEWGDHWGHEFAHRVGKHDLCLDILPPGYTLTTTRDEQGRLQRQVEYDTASFFLSAWLRCLVFSLMTLFGQALGGECANMWAGTLLRKFIRRPATLYLVGKELHVVFDPFPDQEELRPLLEELNAKRVALPWLNGLVIQFSIAQDEPLHPLTEPEKRQRLFGDG*
Ga0078058_109320	Ga0078058_1093201	F013484	IHLEFSGRTLSTEHQAIVDALNEFLAWLPDGEDPNAALRLAMMILEAANVAPQAVLAQAVGFGQDRSVRVYKQRLREEGLSGLFDHPIPGRPALTTKTEVEKALLRVILSAVIEEHALPDDVTLAEGVNRILREAQEPEAGHVTASMIEAIRLRWGIQRPTLVRQLQATQLAATAERAQMRLGQTRVGGAFILAVLLVETGWLKLAYLLPMAANYAVTAVQWLLTAIFAVIFGVQRAFHLDDVRDIGFALVTGRPRPLTHGTFQHLLHAIPKEKAQAFYAASAQLEVQALGEGPRRISLDGHNLPRYTRLVDLPKGKIGNTGRILKAEELVLAYDLDAHLWLALRVYRGTKKLSQGLVEMVREILKHRGDIPGRLRVFFDKGGYSGQIFRDLAEESQVRFYTPAVRYPANVELWEQLKDSDFDPEPFAFDKHADLPPDRRPVYRLADTEMTLNVRADRKVVDTVTLRAIVLHDPQGEKPAERWPVVFLTDDRDIDARALLNEFGDHWGQEFAHRIGKHDLCLDILPPGYVLKTRQ