3300005745: Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS844

Overview

Basic Information

• IMG/M Taxon OID: 3300005745
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114926 | Gp0118608 | Ga0077123
• Sample Name: Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS844
• Sequencing Status: Permanent Draft
• Sequencing Center: Marine Biological Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 95261731
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	1
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Community Analysis Of Hydrothermal Vent Diffuse Flow Samples From Mid-Cayman Rise, Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Diffuse Flow Fluid → Microbial Community Analysis Of Hydrothermal Vent Diffuse Flow Samples From Mid-Cayman Rise, Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Mid-Cayman Rise
• Coordinates
  • Lat. (^o): 18.374735
  • Long. (^o): -81.797326
  • Alt. (m): N/A
  • Depth (m): 2376

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013484	Metagenome / Metatranscriptome	271	Y
F079616	Metagenome	115	Y
F097602	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0077123_102817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	1488
Ga0077123_109126	Not Available	2594
Ga0077123_117150	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	2379

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0077123_102817	Ga0077123_1028172	F097602	VTILPGEGPSALGRSNYDSLSPKRCSNADVMNRGSADEAVVIVKFGADEFMVTWRRIKHRISGRKLEVKGGTRKRSRPLIIDWWFEISLT*
Ga0077123_109126	Ga0077123_1091262	F013484	MDIHLEFSGRTLSTEHQAIVDALNEFLAWLPDGEDPNAALRLAMMILEAANVAPQAVLAQAVGFGQDRSVRVYKQRLREEGLSGLFDHPIPGRPALTTKTEVEKALLRVILSAVIEEHALPDDVTLAEGVNRILREAQEPEAGHVTASMIEAIRLRWGIQRPTLVRQLQATQLAATAERAQMRLGQTRVGGAFILAVLLVETGWLKLAYLLPMAANYAVTAVQWLLTAIFAVIFGVQRAFHLDDVRDIGFALVTGRPRPLTHGTFQHLLHAIPKEKAQAFYAASAQLEVQALGEGPRRISLDGHNLPRYTRLVDLPKGKIGNTGRILKAEELVLAYDLDAHLWLALRVYRGTKKLSQGLVEMVREILKHRGDIPGRLRVFFDKGGYSGQIFRDLAEESQVRFYTPAVRYPANVELWEQLKDSDFDPEPFAFDKHADLPPDQRPVYRLADTEMTLNVRADRKVVDTVTLRAIVLHDPQGEKPAERWPVVFLTDDRDIDARALLNEFGDHWGQEFAHRIGKHDLCLDILPPGYVLKTRQDEQGQQVREVEYDNTAFFLSAWLRCLVFNLMTCFAQAMGREYSKMWAGTLLRKFIRRPATLYLVGKELHVVFDPFPGQDELQPLLDKLNAKRTALPWLNNLVVQFSIAQDEPLHPLTEPEKRNRLFGDD*
Ga0077123_117150	Ga0077123_1171504	F079616	MENTFEIGEVVVCVNARRNWYKLGGLKKDEMYTVVGYNPYDNGLILKEVKSPGSGYNAFAAERFRKVDYNFAENVLEDLQPQIISEVSPKNFIKSNLN*