3300005736: Seawater microbial communities from Vineyard Sound, MA, USA - sterilised with crude oil T7

Overview

Basic Information

• IMG/M Taxon OID: 3300005736
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114816 | Gp0117154 | Ga0076928
• Sample Name: Seawater microbial communities from Vineyard Sound, MA, USA - sterilised with crude oil T7
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Wisconsin, Madison
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 59195408
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → Viruses → environmental samples → uncultured virus	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED197	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Degradation Of Oil
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → mesocosm → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: USA
• Coordinates
  • Lat. (^o): 41.4417
  • Long. (^o): -70.7744
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004489	Metagenome / Metatranscriptome	436	Y
F018190	Metagenome	236	N
F033444	Metagenome / Metatranscriptome	177	N
F034344	Metagenome	175	N
F060822	Metagenome / Metatranscriptome	132	N
F064686	Metagenome / Metatranscriptome	128	Y
F083372	Metagenome	113	N
F097149	Metagenome / Metatranscriptome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0076928_1001415	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2806
Ga0076928_1025084	All Organisms → Viruses → environmental samples → uncultured virus	775
Ga0076928_1040614	All Organisms → Viruses → Predicted Viral	1049
Ga0076928_1041080	All Organisms → Viruses → Predicted Viral	1019
Ga0076928_1042574	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED197	1896
Ga0076928_1046297	Not Available	523
Ga0076928_1068470	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	945
Ga0076928_1079089	Not Available	678

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0076928_1001415	Ga0076928_10014153	F097149	MSGWLALTAVTYMLYVMFERGSISSPYKKDIKLSVDDPNLEDKIRKKYFKEN*
Ga0076928_1025084	Ga0076928_10250841	F004489	MANPIACIEAINNVRTSVQGNDPRGWMKACAKETLLKMGNEHDFKKCLIHKMESTKQHIEDPQGYA
Ga0076928_1040614	Ga0076928_10406142	F033444	MDIKKIFTWLPIALALIGSLYTGINVISKLNNTIEQHTIAISNLEQSLVSIDERYKIEIKNLTQKYTEGREELFREVTFLNTEIAQARAKVEALDNSYYKVNDAVRDLGYDLKDFKREVTGDY*
Ga0076928_1041080	Ga0076928_10410804	F064686	MKDKITHDEYQKAWFALHEGIITEEEWRAFCDILFAQTLEENKDVMVRLKNR*
Ga0076928_1042574	Ga0076928_10425747	F060822	KKQIDVDCGYNEESANNVYMFHNIKNNIHLFINAYDLEDAMVQFDLCDFAFRKEWRVFLETGQQPS*
Ga0076928_1046297	Ga0076928_10462971	F018190	MSKYDKGPETIQETIDRLQDYYNDPNNGINKCFIVQRIKELKQRQLQNNLEKRNFFRIFTR*
Ga0076928_1068470	Ga0076928_10684704	F034344	MFVPVKDKLDKLVALTPDDQEKLSYYKSIVPLMIANCHKAHQTIPGYDKCKPEVEAFKWFDGINIPVH
Ga0076928_1079089	Ga0076928_10790893	F083372	MIMQQYKISYPRAEFAYARHIRDNLKHEGEIIYPHQPSCRLLEDGTWLLITITGERLGTVSPNGTVRLT*