3300005627: Crenothrix polyspora biofilm communities from Wolfenbuettel waterworks, Germany

Overview

Basic Information

• IMG/M Taxon OID: 3300005627
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0084224 | Gp0054464 | Ga0077107
• Sample Name: Crenothrix polyspora biofilm communities from Wolfenbuettel waterworks, Germany
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 24508778
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Nitrospirae	2
Not Available	1
All Organisms → cellular organisms → Bacteria	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Crenothrix Polyspora Biofilm Communities From Wolfenbuettel Waterworks, Germany
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Crenothrix Polyspora → Crenothrix Polyspora Biofilm Communities From Wolfenbuettel Waterworks, Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Surface (non-saline)

Location Information

• Location: Germany: Wolfenb?ttel, Lower Saxony
• Coordinates
  • Lat. (^o): 52.149
  • Long. (^o): 10.542
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007831	Metagenome / Metatranscriptome	344	Y
F008161	Metagenome / Metatranscriptome	338	Y
F018543	Metagenome / Metatranscriptome	234	Y
F059300	Metagenome / Metatranscriptome	134	Y
F064859	Metagenome	128	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0077107_103870	All Organisms → cellular organisms → Bacteria → Nitrospirae	837
Ga0077107_104844	Not Available	803
Ga0077107_108248	All Organisms → cellular organisms → Bacteria	824
Ga0077107_108348	All Organisms → cellular organisms → Bacteria → Nitrospirae	746
Ga0077107_112665	All Organisms → cellular organisms → Bacteria	823

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0077107_103870	Ga0077107_1038701	F008161	METSQRDELLGTITWWGFHALLVWIGAWHFLSRNLTDGGLFVSDLFAGALLVATALSLLRLSVGCHFLRFVALTGILLVIYRVWEGKAELGNLTDVAIWAYTFYSFGPSSWRFSLYSPLGVFGKLKA*
Ga0077107_104844	Ga0077107_1048441	F007831	MMILVAVMFLLPPVLGTLYLYVSGVFINRRTFQFVFYTLLAFFALTIGISTQFSYQGYDRLATTPVSLLPVLPEP*
Ga0077107_108248	Ga0077107_1082483	F018543	MIETWSNQSAAANRRPAGQADGSDNLSAIVAADRAFPAAVAELGR*
Ga0077107_108348	Ga0077107_1083482	F059300	MVGFTVGAGAGDVGFPICGLFVESAESISSLGDRRPGFVGSRDMGHEAACGERDVTTLRSFSLRHAKTTRLFCRGV*
Ga0077107_112665	Ga0077107_1126651	F064859	MKRIVMLAAALVIALGNEASARLGNTEDQVAALFGKPTDAGEPDSDGITTNMYKNRTGEYLALVQF*