Sample 3300005502

Basic Information
IMG/M Taxon OID	3300005502 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046783 \| Gp0111642 \| Ga0068680
Sample Name	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_2100 MetaT (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_2100 MetaT (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	74387142
Sequencing Scaffolds	23
Novel Protein Genes	28
Associated Families	23

Dataset Contents

Total Genome Size

74387142

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	16
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. 303MFCol5.2	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Prochlorotrichaceae → Nodosilinea → Nodosilinea nodulosa	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. 303MFCol5.2

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Prochlorotrichaceae → Nodosilinea → Nodosilinea nodulosa

Ecosystem Assignment (GOLD)
Name	Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Ecosystem Assignment (GOLD)

Name

Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → microbial mat material
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

aquatic biome → hot spring → microbial mat material

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Wyoming: Yellowstone National Park
Coordinates	Lat. (^o)	44.963	Long. (^o)	-110.715	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Wyoming: Yellowstone National Park

Coordinates

Lat. (^o)

44.963

Long. (^o)

-110.715

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000642	Metagenome / Metatranscriptome	965	Y
F004024	Metagenome / Metatranscriptome	456	N
F004307	Metagenome / Metatranscriptome	444	Y
F004791	Metagenome / Metatranscriptome	423	Y
F005302	Metagenome / Metatranscriptome	405	Y
F005631	Metagenome / Metatranscriptome	394	N
F007404	Metagenome / Metatranscriptome	351	Y
F008499	Metagenome / Metatranscriptome	332	Y
F025895	Metagenome / Metatranscriptome	199	Y
F057401	Metagenome / Metatranscriptome	136	Y
F063723	Metagenome / Metatranscriptome	129	N
F065815	Metagenome / Metatranscriptome	127	N
F069792	Metagenome / Metatranscriptome	123	N
F070164	Metagenome / Metatranscriptome	123	N
F073593	Metagenome / Metatranscriptome	120	N
F073601	Metagenome / Metatranscriptome	120	Y
F075533	Metagenome / Metatranscriptome	118	Y
F080677	Metagenome / Metatranscriptome	115	N
F081941	Metagenome / Metatranscriptome	114	N
F082732	Metagenome / Metatranscriptome	113	N
F083527	Metagenome / Metatranscriptome	112	N
F093914	Metagenome / Metatranscriptome	106	Y
F098323	Metagenome / Metatranscriptome	104	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0068680_1000577	Not Available	1383	Open in IMG/M
Ga0068680_1005505	Not Available	2534	Open in IMG/M
Ga0068680_1006707	Not Available	1024	Open in IMG/M
Ga0068680_1014141	Not Available	2872	Open in IMG/M
Ga0068680_1017660	Not Available	605	Open in IMG/M
Ga0068680_1019203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2128	Open in IMG/M
Ga0068680_1020046	All Organisms → cellular organisms → Bacteria	3729	Open in IMG/M
Ga0068680_1022133	Not Available	620	Open in IMG/M
Ga0068680_1022634	Not Available	1109	Open in IMG/M
Ga0068680_1023604	Not Available	519	Open in IMG/M
Ga0068680_1025637	Not Available	817	Open in IMG/M
Ga0068680_1026336	Not Available	875	Open in IMG/M
Ga0068680_1030715	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium	4753	Open in IMG/M
Ga0068680_1031522	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
Ga0068680_1041335	Not Available	543	Open in IMG/M
Ga0068680_1088681	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. 303MFCol5.2	640	Open in IMG/M
Ga0068680_1105807	Not Available	560	Open in IMG/M
Ga0068680_1107160	Not Available	531	Open in IMG/M
Ga0068680_1110959	Not Available	566	Open in IMG/M
Ga0068680_1121304	Not Available	877	Open in IMG/M
Ga0068680_1130591	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Prochlorotrichaceae → Nodosilinea → Nodosilinea nodulosa	917	Open in IMG/M
Ga0068680_1135688	All Organisms → cellular organisms → Bacteria	2316	Open in IMG/M
Ga0068680_1135783	Not Available	1497	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0068680_1000577	Ga0068680_10005773	F007404	MELIDIFQILAAGHQHLTLVDYLYNALAGAIGALTAYLADNEGEVFLPRYDREYHSVELGALGRVLTGAGAGIIVGYSGFVPFAAGIIAPAILPFVLDKLMERFKRGRV*
Ga0068680_1005505	Ga0068680_10055051	F004307	MFKELVKVGGETERAELNGAYIGRFLGVKEREWPTFRTRNDPEPEYEPVFVFEFEVDDPDFDAPIRVAKWVRKPPRLSHPGKNGKVSNLYKVIAALYGVSQMTDEQLQNAEEFVMSAVGREYQLTIETKPSGWYEIIHIAPVRKMRRREATNGNEEIPF*
Ga0068680_1005505	Ga0068680_10055052	F008499	MKKSRSEPRWKREERKVIKALQAVFGRVSDPSLARLITQTGRVGHLTRFGFDGIVGNDPGYIVEVKARKGMLTKQAIEALLQTIDRAAPFDRIPLLAVVLGDDAPARTANGVKVEREWVLMPLRELKRLVGKEAVYE*
Ga0068680_1005505	Ga0068680_10055055	F025895	MNELIAWIIAAAVILLLANTNVADGLFDALDLSDNLRRAAEWTRGVRSVPAAVSAASFFTLAYVFGALAYRYDLIPTWRFIQPVAQDVLSSGAEWLTLFAVFLTLLPSLIELASVGLAQRSIKALEYMTYFFIFFDLVTDYTEAAALVEVWRNNGLFDPLPSLIAGAATVLAKISWTFAASFAFEFLAVLFAVTGLLLAANIRAPAGGGQQR*
Ga0068680_1006707	Ga0068680_10067071	F081941	SLFIISGFHFILIQLSNLPYSDYKLEITTAIFFVLDFLLVIPTAFTATQFELSPSLKLLLDTICMMTGSIYLVLAAGVFYMDLEDNKILAKRYTRWSVLVFLFFFFIIAMETVRRSMELNILLTFTGINLLLILVIMFADLKSLLNPYPNYQGKTNSIEIISFLLLSATILIGKTLHLVLVLNIFG*
Ga0068680_1014141	Ga0068680_10141413	F073601	AGCPLLGVSLALGRAMLQAKATCLVMALPAKRREGQRMFWVLHFAWCCAIKIIECGSIIRPLPVEKRALAGKGVLLQQG*
Ga0068680_1017660	Ga0068680_10176601	F082732	MTEIVMNQSELAAEIAARLRDEVAAAVKAQRVGVATELDEDTAETGASFGDFLKSVAYNDTRRLRAIYKSAKALDETTGAGGGFLVPTQFEQRIRAVGAPMLFDQLIAANRGPLMLRTNAAELALPVLEQDQTPDVESSALIGGVRLVWRQQSAEAQQSEPRFEQRIFRPHAADAYVAA
Ga0068680_1019203	Ga0068680_10192031	F005302	WTAVSDATVKIDDVELSRPSGEAYVGGTSDYATVTIGKREPVEVTLTFLYDETTNSATNTIYDQFESPTPMLAIRWSPTGVKPNARAYATSNDGTTTGLGVITNVTLSALDPSEAEPYVAMVTVRAPTLRQYVLGAAPVDLSG*
Ga0068680_1019203	Ga0068680_10192032	F004791	MPEPATIYDVDAIRVDRGVLTIRDAAKLLNRELTAPVIARLVRNAIGDQADRFPISALKAVYESVLPKIFEPDSAIRSRVEALMPNITTITLGEYHQFLEANERNIAFPEVAQTLLVKAYGENILDEPYAAASLLLKKIFDAVGSEGKK*
Ga0068680_1020046	Ga0068680_10200462	F073593	MFLKGLNKIHIHLGKIRFFLLIFVFVYFFSLSLLVHAQTTTSSNPTENNPILSQLSGLNILQNVCIYPGFPDPSCNRDNSILLTVWEYLIRFVAVIGGFTFIYAGYLTMMDKYEQAKKIMSSIVQGVFATLLINAAINLIVESAFPKIGTSQCPPGQVVRSNIFGDYCINLDINPVIDFAIVVINSLLLPASAIIAALFFLAGLYNLLISGGNATRVETGWKYMKNSILGLVAGLLSYTVINLVYSILLIFFK*
Ga0068680_1022133	Ga0068680_10221332	F005302	MAHSGVVQGLYAGNFAVEISTNGTTWTAVSDAIVKIDDVELSRPSGEAYVGGSSDYATVTVGKREPVEITLTFLYSEAPNATAFVIYDQFESVNPALAVRWSPVGIKSNAIAFATSNDGVTTGLGVITNVTLSALDPSEAEPYVAMVTVRAPTLRQYVLGAAPTDLS*
Ga0068680_1022634	Ga0068680_10226342	F098323	MLKNKSWILLVIFALFGFINTSIPVWTQENTTTQFDNAILAKNQQLIVPIGRADTSVDPACKNLINEIVKCDSGNGSCVVLKFRKATEDDKERYRQLTENAKKCVGSNSNNLDDRQKLDLINKVCLVLPAASSNDRTFFCQACIGRGVTKPSNWTDQDIVDKCNSTIPANNSSKKLVNRKIDQNGQVKEVLATRINVKEKLLGVARATEDNFYLTVANQLA
Ga0068680_1023604	Ga0068680_10236041	F004307	VKLGDSNDERPVLNGAYIGRFLGVKERQRPTFDTRLNSEPELEDVFVFEFEVDDEELPQPIRVAKWVRKPPRLSHPGKNGKVSNLYKVIAALYGVSQMTDEQLQNAEEFVISAVGREYQLTIETKPSGWYEIIHVAPVRRARRKEVMSGNEEVPF*
Ga0068680_1025637	Ga0068680_10256372	F004024	MQSERDYVRQSSLGDDDMMFLDARATLAAALTRAVVGYSDNRVRALAWLAVAVPRLYDRIAPIVESSAIRQSPGAARALRDALRALSLEEYMRRRDERRSER*
Ga0068680_1026336	Ga0068680_10263361	F000642	ASGGALTSFLGRAERAGSFGVQVVSIALALCAVAAALWYMRRREAGAGRLRGWLLLWDELGGWRALSATYGDSGIVADGVTYPASLPVVRVGRDLVWIARCDSAALVEHQALERARESAALASLWRGGGQWLDFLRVAGVVLPAVFAYFTWAQVGALQALVAQILALVGEGR*
Ga0068680_1030715	Ga0068680_10307154	F004791	MPEPATIYDVDAVRVDRSVLTIREAATLLNRELAAPVIARLVRKAIGDQADRFPIRALKVVYERVLPQIFEPDAAIRARVEGLVPNVTTITLGEYHQFLEASERGIAFPEVTQTLLTKAYGDGILEEPYAAAALLLKKIFDLVGEEGKG*
Ga0068680_1030715	Ga0068680_10307155	F005302	GTIWTAVSDATVKIDDVELSRPSGEAYVGGSSDYATVTVGKREPVEVTLTFLYGETTNSATNTIYDQFESPTPVLAVRWSPTGVKPNARAYATSNDGTTTGLGVITNVTLSALDPSEAEPYVAMVTVRAPTLRQYVLGAAPTDLS*
Ga0068680_1031522	Ga0068680_10315221	F005631	VGRQHIHDAGAVYDWCGEMKLSTSVDIDNALRKLVPQTARIESALDAGAAAAHGVMQIYPPPPAGSRYQRTGNLRQKLRIKKLSRTTRIVENTASYARFVYGMPQARVHRGRWASVVDAAEAARVEAEKVLRGR*
Ga0068680_1041335	Ga0068680_10413351	F069792	FFGRQTLAFLILFLLVFSLPSSNFRKSEVLVDPKTVINSNFFLKQVKPETLKNSLPSLQETKISLIFNRQDKRFLFDVSGNPVFNKTIVQAYSKSFIYETPNLDLNLETFRKAQTTKGQKMRQLPLDDLIPRPKNPDPAKTNLLLYPKYNIRAPIIYTTAADFYHTNPDGSIDFNRPIYR
Ga0068680_1088681	Ga0068680_10886811	F080677	FYQELVENFTWWSVGMFALLAGAFNLTQGVWGWLSAICFLLASMVTLPVFRSWLTSKIIVLQSPKLVRKITIGAMFLLLLAVMLTPVSVDQQTTFASEARSDSTTELPIVKQSTETVPLIIKLISSLGG*
Ga0068680_1105807	Ga0068680_11058071	F070164	NVYGSGQHQIAGFQLGDRRHDIEAAYKFCYKREFPIGAGQVMQENLNYSSNATREAWNYNNPVYAGKIPLGDLNREFTVGDFYPSCSSHECEARTQLLVKHPCMAMYLNTAADTWDGFNDNWGNAQVIVSALHYYILDLKNGAS*
Ga0068680_1107160	Ga0068680_11071601	F083527	MSDFYGVKIQQSRPIVDAIRAAVAAKRRPVAARERVYASEISACDRRITFALLGCGPDEIRADSPSALMGDAIHAHLEALLAGAFPGRIETEVRVVGDAVSGRIDALLRENDGTL
Ga0068680_1110959	Ga0068680_11109591	F057401	EDFHCVVRAYRLARWANHAWGLLEPEHLAEVWNLAPSLKAFAELLPGYSVARGWVVEGPAGYGVLGPEYDYPETLVVDIGGNLQVRALVKPGETTVRYDHGYDGSVLRFAQASVAAGLVVGAEGYKAAPRYWARVARLLIIAEKPSDLEAEGIRDALRAMVGEEPAALEEFDGYFELTGPGILAGPEV
Ga0068680_1121304	Ga0068680_11213041	F004791	MSEPAKIYDVEAIRVDRTALTIREAATLLNRELTPEVIARLVRKAIGNQADQFPIRALKAVYERALPKIFEPDEAIRSKVAGLTPNVATITLGEYHQFLEASERKVAFPDVAATLLVKAYGDDILNEPYAAAAPLLKRIFDAVGDEGNG*
Ga0068680_1121304	Ga0068680_11213042	F093914	SDYATITIGKREPVEITLTFLYSEATGAAATAIYDQFESATPRLGVRWSPTGLVASARAYATSNDGNATGLGVITGVTLSALDPSEAEPYVAMVTVRTPTLRQYAIAATNPTNLA*
Ga0068680_1130591	Ga0068680_11305911	F075533	QMRIRTKKAFTITTYDLLFLAYLYDQPERYFRIRAYENIRVTSIAYTNLAVGVLIAPITAVPQPDAYTFTLGTFTLQPAPGTVIETNCYGWIVGVLAPGNETTAGDTSVTFHVTVNNTGAYSGHAIDEGLLTSALTGRGGCCDIKLPTGTNVSIAKPDANLREIVEQSTDEYAQVRYRRKRFIRDRTLPTIDFRADSPLVWRFPETTRVVDISKAPNRVFGQYRGYWTDHLTATTTILPLESRRQSLAWRVASVGEYGSKAIAEARRDEAAAAFDRQIAPITIELDNARYELMTREGITVPNWAA
Ga0068680_1135688	Ga0068680_11356881	F063723	NARRVATLDDLAALRGAVLVWDEVQVSLDSREWASEAARTLTRDMILWGKRGIVCVYTSPAFATVDVRLRRLTQYVYVTAGRYRRAGCDYAVYRWHEHPYADDVLVERYKFALRLDSWYGVYDTLYGASDGDTLAIVASPSPSLAHARRRA*
Ga0068680_1135783	Ga0068680_11357832	F065815	PNKPMQPETNNPNPQANQPTKSTEETSVTDAKKNNTSTPEVEQQSKSGFYQDLNSVLLVTILSLLIYTIVGSGLSWIVSWGLAQANLYPWVFNQSPILLWAIFGLVSMLIIGVTMVQVESLVETRILPKLQKFSQPTLLLVNFLVLMGLILGMYWLVSNFVNYLNITFWLK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300005502: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_2100 MetaT (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences